PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02324.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 458aa    MW: 49671.1 Da    PI: 6.3683
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02324.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21315377163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L+aeN +Lk+e+++l ++++klk ++
  Sme2.5_02324.1_g00011.1 315 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQALTAENLTLKSEINKLMENSEKLKLDN 377
                              89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-311123IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.2E-31165296No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-16309374No hitNo description
PfamPF001702.8E-20315377IPR004827Basic-leucine zipper domain
SMARTSM003388.9E-19315379IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.518317380IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-10318374No hitNo description
CDDcd147026.17E-20320368No hitNo description
PROSITE patternPS000360322337IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGNSEDGKSC KPEKPSSPAP VSKFAYGYRF GAFKAFDFLD PWLIRSFVPY EDQSNLHVYP  60
DWAAMQAYYG PRVAVPTYFN SAVGPGHTPH PYMWGPQPMV PPYGAPYAAI YAHGGIYAHP  120
GVPIGSHPPG HVMATSPVVS QAMVYMPDGA SLSLDASAKS SGNSDRGFVT KLKEFEGLAM  180
SLGNASTDNV EGGTDNGHSQ SGETEGSTDG SDTNGAGVSE RNKKRSYETT PDNSGDDKSR  240
SRRRQPTGEV NDDDEKSIVA VSPGKVAAKV TGTVLSPSMT TLEMRNPASA HMKASPTYGS  300
PLSPALPNET WLQNERELKR EKRKQSNRES ARRSRLRKQA EAEELAIRVQ ALTAENLTLK  360
SEINKLMENS EKLKLDNNAL MERLKNEQLG QTEEVSLGKI DDKRLQPVGT VNLLERVNNS  420
GSADRTNEEG EVYENNNPGA KLHQLLDTSP RTDAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331337RRSRLRK
2331338RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX603630.0X60363.1 Tobacco mRNA for truncated TAF-1 protein, binding to G-box motif.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538167.10.0PREDICTED: transcriptional activator TAF-1
SwissprotQ991421e-151TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLA0A1U8DT230.0A0A1U8DT23_CAPAN; Common plant regulatory factor 1
TrEMBLA0A2G2YY320.0A0A2G2YY32_CAPAN; transcriptional activator TAF-1
STRINGPGSC0003DMT4000002660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-88G-box binding factor 3
Publications ? help Back to Top
  1. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]