PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02052.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 23891.2 Da    PI: 9.5902
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02052.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien+ nrqvt+skRrngi+KKA+E+ vLC+a+v++iif+ +gk++ey+s
  Sme2.5_02052.1_g00002.1  9 KRIENSNNRQVTYSKRRNGIIKKAKEITVLCEAKVSLIIFGASGKMHEYCS 59
                             79***********************************************96 PP
2K-box77.73e-2671165195
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              yqk+sg++l++ak+e+l++e++++kke++++q ++R+l+Ged++sL+ keL  +e++L+++l++i +k++e+l++  ++ q  e+e
  Sme2.5_02052.1_g00002.1  71 YQKASGRRLWDAKHENLSNEIDRIKKENDSMQVKLRQLKGEDINSLNPKELIIMEEALQNGLSSISAKQSEILRMVRKNDQILEEE 156
                              8999********************************************************************************** PP

                    K-box  87 lqeenkaLr 95 
                              +++ + aL+
  Sme2.5_02052.1_g00002.1 157 HKQLQYALH 165
                              *99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.511161IPR002100Transcription factor, MADS-box
CDDcd002651.60E-39280No hitNo description
SuperFamilySSF554555.36E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-1682163IPR002487Transcription factor, K-box
PROSITE profilePS5129712.97984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRGKIEIKR IENSNNRQVT YSKRRNGIIK KAKEITVLCE AKVSLIIFGA SGKMHEYCSP  60
STTISEMLDG YQKASGRRLW DAKHENLSNE IDRIKKENDS MQVKLRQLKG EDINSLNPKE  120
LIIMEEALQN GLSSISAKQS EILRMVRKND QILEEEHKQL QYALHPTPTK GSSCPNYKGQ  180
QTPVSQAPKG DGNHAANAVP DAICPTCSAN AAKST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16175173MEF2 CHIMERA
6byy_B2e-16175173MEF2 CHIMERA
6byy_C2e-16175173MEF2 CHIMERA
6byy_D2e-16175173MEF2 CHIMERA
6bz1_A2e-16175173MEF2 CHIMERA
6bz1_B2e-16175173MEF2 CHIMERA
6bz1_C2e-16175173MEF2 CHIMERA
6bz1_D2e-16175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6745310.0DQ674531.1 Lycopersicon esculentum TPI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608638.11e-110PREDICTED: floral homeotic protein PMADS 2
RefseqXP_016492047.11e-110PREDICTED: floral homeotic protein PMADS 2
SwissprotQ074741e-107MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A1S4BT431e-109A0A1S4BT43_TOBAC; floral homeotic protein PMADS 2
STRINGXP_009608638.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]