PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01832.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 348aa    MW: 39289.9 Da    PI: 7.6329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01832.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-51141421129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              lppGfrFhP+deel+++yL kkv+++  + +   + evd++k+ePw++p+ +  + kewyf+s+rd+kyatg r+nrat sgyWka
  Sme2.5_01832.1_g00005.1  14 LPPGFRFHPRDEELICDYLMKKVDQSVDQQQYPlLIEVDLNKSEPWEIPEIACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKA 99 
                              79**********************999666555599*************7666689****************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              tgkd+++++ kg+lvg++ktLvfy+grapkg+k+dWvmhe+rle
  Sme2.5_01832.1_g00005.1 100 TGKDRAIIR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 142
                              ********9.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-593168IPR003441NAC domain
PROSITE profilePS5100556.77614167IPR003441NAC domain
PfamPF023654.0E-2615141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSNSSLSMV ESKLPPGFRF HPRDEELICD YLMKKVDQSV DQQQYPLLIE VDLNKSEPWE  60
IPEIACVGGK EWYFYSQRDR KYATGLRTNR ATVSGYWKAT GKDRAIIRKG SLVGMRKTLV  120
FYQGRAPKGR KSDWVMHEFR LEGPLSNTRS QISSTKEDWV LCRVFHKNKE LLAAQHGTGS  180
NNIYYDNDTI SSSTLPTLMD PYINFDQTNP TNNINMNELY YEQVPCFSIF TPNQTFTSHN  240
HHHHHPPTAT GSTPVTATYG GFPADIGNYL NATTTSSTCD NKVIKAVLSH LSTKNIVEGN  300
NNNNNDIINR AQNIVNIKGG NSPSFGEGSS ETSFLSEVVY PTTMWNNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-5011684166NO APICAL MERISTEM PROTEIN
1ut4_B6e-5011684166NO APICAL MERISTEM PROTEIN
1ut7_A6e-5011684166NO APICAL MERISTEM PROTEIN
1ut7_B6e-5011684166NO APICAL MERISTEM PROTEIN
3swm_A7e-5011687169NAC domain-containing protein 19
3swm_B7e-5011687169NAC domain-containing protein 19
3swm_C7e-5011687169NAC domain-containing protein 19
3swm_D7e-5011687169NAC domain-containing protein 19
3swp_A7e-5011687169NAC domain-containing protein 19
3swp_B7e-5011687169NAC domain-containing protein 19
3swp_C7e-5011687169NAC domain-containing protein 19
3swp_D7e-5011687169NAC domain-containing protein 19
4dul_A6e-5011684166NAC domain-containing protein 19
4dul_B6e-5011684166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3088281e-165AY308828.1 Capsicum annuum salicylic acid-induced protein 19 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346053.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-110NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM1C0290.0M1C029_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000569160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-108NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]