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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00595.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26704.6 Da PI: 5.4148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 90 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g Sme2.5_00595.1_g00009.1 90 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFAMRG 140 69*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-20 | 89 | 150 | No hit | No description |
SMART | SM00380 | 1.1E-38 | 90 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 90 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 90 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 90 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 90 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDSSSCSSHF FYSMNSDLNS SDSSWEWSNP SSLPFNVNDS EEMLLFGVLA NAAQETTSET 60 VTSHRVKEEE VSSQSEVVGE IGAKPAKEKS YRGVRRRPWG KFAAEIRDST RNGVRVWLGT 120 FDSAEAAALA YDQAAFAMRG TSAILNFPVD TVRESLRDMK CHVDAECSPV VALKKRHSMR 180 KRSTSSKKNS NSNKVMREVK MENVNNVVVF EDLGADYLEQ LLNSSSSDQS SCDATYFSTW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 86 | 149 | 1 | 64 | ATERF1 |
3gcc_A | 2e-28 | 86 | 149 | 1 | 64 | ATERF1 |
5wx9_A | 2e-28 | 81 | 148 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354500.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-71 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1BG39 | 1e-123 | M1BG39_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400044379 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-41 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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