PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00482.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 542aa    MW: 61629.4 Da    PI: 7.0629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00482.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.74.9e-1982172199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk++   d   s+ l +p kfa++ ++   ++++  led+sg++W+v++  +++ g+  +++GW +F +++gL++gDfvvF+++ 
  Sme2.5_00482.1_g00012.1  82 FFKIM--IDKRFSQVLFFPPKFARSVSHL--TDQETYLEDSSGQRWRVTV--CNHHGSLSIRQGWPKFSSDHGLDVGDFVVFHYVP 161
                              78888..88888889**********9766..4568***************..*******************************985 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               + f   vk+f +
  Sme2.5_00482.1_g00012.1 162 GQHF--IVKIFGT 172
                              5666..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-2178175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.21180173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-2081175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-1781170No hitNo description
PfamPF023628.5E-1782171IPR003340B3 DNA binding domain
SMARTSM010196.4E-1182173IPR003340B3 DNA binding domain
SMARTSM010190.46446537IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-8456533IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-6463534No hitNo description
SuperFamilySSF1019361.57E-9465528IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.459477537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNEKTTLVSW TVHWRELGCN FEAGVCSFLG FSDGTNFFFF FLHRFRFHFR FRLLLSKEME  60
YEKEECDGCK DSLIHGKGVL SFFKIMIDKR FSQVLFFPPK FARSVSHLTD QETYLEDSSG  120
QRWRVTVCNH HGSLSIRQGW PKFSSDHGLD VGDFVVFHYV PGQHFIVKIF GTSGCEKKKF  180
CSDIDNGRKR SRTYPEATTP SERFQTTDIN SVKKKSKTSD ESESEKVTYK PNITKFATNT  240
DAETRKEQPV TNFATNIDAE LRKGQSVHST IDVDESFCMI DRNSQYDQED DRLCLHLSSF  300
EMPASRPLAE GTSSPLLGDT GKDNHVGTNL NSQEEPNLNV EIGNLNSEAL LSKLEAGITA  360
TNMASRPVED IPLPGPKYKK SNEASQFARE ERLVKKEFEE ITTKTFSTAR AIRDSGGQYT  420
NANEKVIKSE PADSGDTPSL NAVYACLLEI DGRDFLELEE SWRKHLLKRA KQGRMIVYLR  480
GPDKRIWPTF YHCKSGLNVL TSGWKQVAAA YGMNPGDDCL FQLVDQQKCL FDIRKIAMPV  540
SH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-141HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351459.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X1
TrEMBLM1B7Z90.0M1B7Z9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-11B3 family protein