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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00250.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 36079.6 Da PI: 5.9932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ Sme2.5_00250.1_g00012.1 49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 100 68*****887.8*********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-14 | 49 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-28 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 50 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-28 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.77E-28 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 4.7E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MNNHLSSYSA HLNPLSATTP SDEEGILLLA SSRPKKRAGR KKFKETRHPV YRGVRRRNNN 60 KWVCELREPS QQKRIWLGTY PTPEMAARAH DVAALALRGN LATLNFADSR WRSPVPASKD 120 PKDIRQAAVT AAQTYSQDHE LVGVDYMNEE AYSSTIEEVK YQEIDIARDD NGSSSDFGAK 180 ELNIDMANVL CCKWGEENEM SEMEGWRKKM AEGLLFSPTP RLGSCFSWDD VESDVEAKDT 240 TIDFMAFLDA FFRFPIQIFS PKTPYCHSGT DVDISTADVG IGFPVEATAL VNSQSFSSLA 300 AIGNLQVLYL GCLLGRACYR LGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083759.1 | 1e-150 | dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A3Q7HI06 | 1e-149 | A0A3Q7HI06_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007820.1.1 | 1e-149 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-42 | ERF family protein |