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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00194.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 768aa MW: 85708.7 Da PI: 5.8949 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 72.1 | 8.3e-23 | 199 | 249 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 k r++Wtp++H++F++a++qL G ekA+Pk+i+e+m+ +gLt+ehv+SHLQ Sme2.5_00194.1_g00016.1 199 KRRVVWTPKMHQNFLQAIQQL-GCEKAVPKKIVEIMNEPGLTREHVASHLQT 249 689******************.9****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.85E-7 | 18 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-9 | 18 | 158 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 197 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-15 | 198 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 199 | 253 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:3.40.50.150 | 1.3E-51 | 478 | 694 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 7.55E-56 | 493 | 767 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
TIGRFAMs | TIGR00755 | 1.7E-58 | 495 | 764 | IPR011530 | Ribosomal RNA adenine dimethylase |
PROSITE profile | PS51689 | 61.441 | 495 | 768 | IPR001737 | Ribosomal RNA adenine methyltransferase KsgA/Erm |
Pfam | PF00398 | 3.3E-42 | 496 | 765 | IPR001737 | Ribosomal RNA adenine methyltransferase KsgA/Erm |
SMART | SM00650 | 6.8E-56 | 509 | 694 | IPR020598 | Ribosomal RNA adenine methylase transferase, N-terminal |
PROSITE pattern | PS01131 | 0 | 525 | 552 | IPR020596 | Ribosomal RNA adenine methylase transferase, conserved site |
CDD | cd02440 | 0.00357 | 525 | 622 | No hit | No description |
Gene3D | G3DSA:1.10.8.100 | 9.6E-16 | 699 | 767 | IPR023165 | rRNA adenine dimethylase-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000154 | Biological Process | rRNA modification | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0000179 | Molecular Function | rRNA (adenine-N6,N6-)-dimethyltransferase activity | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MDIQGVTANS SDMGTKNICM LIVLDDFTSH NFVCDMLHNQ THQVLHVGKT MDTLNAVWER 60 KSIFNLVLTN IHRLNTNGVD ILQIIKNKLN LPTILLSPDD TRYENQVQDC SVAAYVVSFS 120 DTNEMDKFWQ MVLEKEKGRK ATLNQEENAS TLPQDVTAET SRENTSSVDT DAAIRARDLK 180 GKQKANTERS EENRDIEKKR RVVWTPKMHQ NFLQAIQQLG CEKAVPKKIV EIMNEPGLTR 240 EHVASHLQTH FQQVNGGMNC PTSGQMGSFQ QQNSLLDLAN LQQADHSGLI GQHALFAPRL 300 AHNSNFRVYG DRRKNVLFSI ESVNENQPTN SNSGLEFLGF RLSTDGKSVN FGHKGSSCAV 360 IPNNSYSALC SSMSEDYTPQ QQSSPQFLET PIETTSLNKT SCQIPEMPDS FIPQEQLSAQ 420 PSSGDLEDYS AILFGEEVYV PSLENHDSIQ QEYSAPELPQ VTLEVKSFSE IRVNNKAEDD 480 YHATLKALNS KGRFPRKSLG QHYMLNSEVN DQLIAAADVQ EGDLVVEIGP GTGSLTNALV 540 NSGATVLAIE KDPYMAAIVM ERFSSLDCVK VLQEDFTKCH IRSHLSTVLQ SGRNSSGAKP 600 QYAKVVSNLP FNISTEVIKQ LLPMGDVFSE VVLLLQEEAA VRMVDSSLRS SEYRPINIFI 660 NFYSDPEYKF HVPRTNFFPQ PKVDAAVVSF RLKQPVDYPP VSSAKSFFSM VNCAFNGKRK 720 MLRKTLQHIC SSLEIEEALV SAGLPSTSRP EELSLNDFVR LHNLIVKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ifs_A | 2e-30 | 484 | 768 | 11 | 290 | Ribosomal RNA small subunit methyltransferase A |
6ifs_B | 2e-30 | 484 | 768 | 11 | 290 | Ribosomal RNA small subunit methyltransferase A |
6ift_A | 2e-30 | 484 | 768 | 11 | 290 | Ribosomal RNA small subunit methyltransferase A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-146 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168044.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | M1DH86 | 0.0 | M1DH86_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089008 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3659 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-29 | response regulator 2 |