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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00190.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 563aa MW: 62813.9 Da PI: 4.6408 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.5 | 1.4e-32 | 138 | 277 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+Ptd+e++ +L kv+g + + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r Sme2.5_00190.1_g00015.1 138 LPRGVKFDPTDQEII-WHLLGKVKGGDwnshpfI--DEFIPTVDkddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRR 219 699************.678889999986775332..334666655567**********.677888899****************** PP NAM 77 atk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l Sme2.5_00190.1_g00015.1 220 KIHgdnsgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYisPFKGGKAEKTNWVMHQYHL 277 85545544778************.99************6523777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-37 | 124 | 296 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.867 | 138 | 296 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-14 | 139 | 277 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MSDVIGFISG EVGEVGICVL GFSEGWYARF TVSTCIDRAT IGYKPSSPES TCEITLGMLL 60 LCEIFWLDST MDFEVRFAEK LELDQPSWLV DSRRIATKIK SASGDPGAVN WKSNPTKACP 120 NCQFIIDNND VSHDWPGLPR GVKFDPTDQE IIWHLLGKVK GGDWNSHPFI DEFIPTVDKD 180 DGICYTHPQN LPGVKQDGSV SHFFHRAIKA YNTGTRKRRK IHGDNSGDVR WHKTGRTKPV 240 ILDGIQRGCK KIMVLYISPF KGGKAEKTNW VMHQYHLGTG EDEREGEYIV SKVFYQQQQV 300 KQGERNEQDF PEDSECLVAK ADPHTPKSVT PEPPRGERLS SSTDARQQIV ASNISPVNQG 360 GGKVAYTLPS RDPTCGIKLD VASLSVQDII PGLFTTSLLA LHQYHAVEDY VQDDLRALAE 420 QTENQDQDIK NQIDETGTKV EAETGDDPKW WDSESQYLLD SQQLVEGLSL CDDLLASQSP 480 NRDGSENDKV QKCKPSLADY AHLGPEDLKK DLEECQQFVS DPANIEIDTP PDFRLSQLEF 540 GSQDSYIAWG GNKYGFDSAE QNG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362531.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-175 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M0ZJN3 | 0.0 | M0ZJN3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-178 | NAC family protein |