PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00142.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 393aa    MW: 44349.4 Da    PI: 6.5077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00142.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00067210232123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++Fs+   L  H  +H
  Sme2.5_00142.1_g00012.1 210 YECKTCNRTFSSFQALGGHRASH 232
                              99**********99999998887 PP
2zf-C2H213.70.00018298320123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  F++   L  H+r+H
  Sme2.5_00142.1_g00012.1 298 HECSYCGAEFTSGQALGGHMRRH 320
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.75E-9209232No hitNo description
PfamPF139121.6E-12209234IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053210237IPR007087Zinc finger, C2H2
SMARTSM003550.063210232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SuperFamilySSF576677.75E-9293320No hitNo description
Gene3DG3DSA:3.30.160.604.7E-4296322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12297322IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533298325IPR007087Zinc finger, C2H2
SMARTSM003550.0098298320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEALEEVVGC PSKDLFHIVK GKRTKRLRLQ SLNIPFSITT SHDSLDAYDK DVNDNGIQNI  60
PSNNSSSNNN NHNIIDNGKD NRDDVPCNNN NNIENGSGIN DEGIACNNNI SNNNNNNHNE  120
TLSSAASSEV FINTFTEEEE ETAKCLVLLS KSREDHPLPR SFFKDVSPPN NNVDFYNEDL  180
RLYRTKFNSK RYIETSTNSG DGTKVGIYVY ECKTCNRTFS SFQALGGHRA SHKKPKALNT  240
EFNRKSYFDF SDEDDYQLNS PATSTRLYNK NKNNIYNINK NLPNPSNNKY SSSSPRVHEC  300
SYCGAEFTSG QALGGHMRRH RGGANINSPY RLSNLSPATS IDQEFGNNNI ITKKQRDHEL  360
SLDLNLPVQD DPVVSLKQQD QEQTQRQLVD CHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056541.11e-168zinc finger protein ZAT5-like
TrEMBLA0A1U8ET741e-164A0A1U8ET74_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y3G81e-164A0A2G2Y3G8_CAPAN; zinc finger protein ZAT5-like
STRINGPGSC0003DMT4000797731e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-38C2H2 family protein