PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00018.1_g00021.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 775aa MW: 88722 Da PI: 5.3291

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00018.1_g00021.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.5e-22	170	253	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn Y+ke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHn Sme2.5_00018.1_g00021.1 170 NFYNCYGKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHN 250 6***************************************99888.....8999**************************** PP FAR1 87 Hel 89 H + Sme2.5_00018.1_g00021.1 251 HLF 253 *77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-19	170	253	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	373	459	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.052	656	692	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.1E-6	664	691	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.7E-6	667	694	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MEESLGTSEQ LPEDEGSDNE AASEEVFDVT CNGIESDDDQ VLNAGANGLE TTPGQILEFE 60 SHGAGRNCEN IIGQNQVLNA GANGLETTPG QILEFESHGA GRNCEHVLSY ESCDIRDNGH 120 QLPEFHSNSL EDSRCGDTTI IDGHTGSSLG KSYPSPVVGM EFESYEDAYN FYNCYGKELG 180 FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TMKEANSRRK ETRTGCLAMI RLRLVESNRW 240 RVDEVKLEHN HLFDPERVQN SKSHKKMDAG VKRKLEPAVD VEVQTIKLYR THAIETPGYG 300 RSDERAVTSK IEGSTRLKLK EGDTQVIFNF FRRVQLTKPN FFYIMDLNDE GYLKNVFWID 360 SRSRAAYAYF GDVVVVDTTC LSKKYDIPLL AFFGLNHHKE TLLLGCILLA DESFETYVWL 420 LRAWLSCMSG RPPQTIITDR CKALENAISE VFPRAQHRLN LPIILDSIVN SVGEVGESEV 480 FHEVLYNTVY SSHKIDEFEV AWEEMTQQFG CRGYGWLQSL YEDRERWAPI YMKDTFLAGI 540 SIDQHGEFMC PFFDGFVHKQ TNLREFFEIY DFVLQKNHQK EVLCDLDSRE FSPALRTRCN 600 YELQLSKLYT KEIFLKFQDE IALMSNCSGI AQIHANGPII TYIVKEQRVQ GDTRDFEVTY 660 DKIGVEVRCM CSCFNFKGYL CRHALSVLNY IGIEEIPNQY ILTRWRKDFK RLYAPELGSS 720 NIDVSNPVQL YDHLHRRAMQ VVDEGMTSQD HYMVAWQAFK ESLNKVRLAA DKHVS

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MEESLGTSEQ LPEDEGSDNE AASEEVFDVT CNGIESDDDQ VLNAGANGLE TTPGQILEFE  60
SHGAGRNCEN IIGQNQVLNA GANGLETTPG QILEFESHGA GRNCEHVLSY ESCDIRDNGH  120
QLPEFHSNSL EDSRCGDTTI IDGHTGSSLG KSYPSPVVGM EFESYEDAYN FYNCYGKELG  180
FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TMKEANSRRK ETRTGCLAMI RLRLVESNRW  240
RVDEVKLEHN HLFDPERVQN SKSHKKMDAG VKRKLEPAVD VEVQTIKLYR THAIETPGYG  300
RSDERAVTSK IEGSTRLKLK EGDTQVIFNF FRRVQLTKPN FFYIMDLNDE GYLKNVFWID  360
SRSRAAYAYF GDVVVVDTTC LSKKYDIPLL AFFGLNHHKE TLLLGCILLA DESFETYVWL  420
LRAWLSCMSG RPPQTIITDR CKALENAISE VFPRAQHRLN LPIILDSIVN SVGEVGESEV  480
FHEVLYNTVY SSHKIDEFEV AWEEMTQQFG CRGYGWLQSL YEDRERWAPI YMKDTFLAGI  540
SIDQHGEFMC PFFDGFVHKQ TNLREFFEIY DFVLQKNHQK EVLCDLDSRE FSPALRTRCN  600
YELQLSKLYT KEIFLKFQDE IALMSNCSGI AQIHANGPII TYIVKEQRVQ GDTRDFEVTY  660
DKIGVEVRCM CSCFNFKGYL CRHALSVLNY IGIEEIPNQY ILTRWRKDFK RLYAPELGSS  720
NIDVSNPVQL YDHLHRRAMQ VVDEGMTSQD HYMVAWQAFK ESLNKVRLAA DKHVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356225.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A0V0IST8	0.0	A0A0V0IST8_SOLCH; Uncharacterized protein
STRING	Solyc06g068210.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]