PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G521000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 31376.4 Da PI: 4.3549 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 73 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ g+W+Ae+rdp+ + r++lg+f tae Aa+a++ a++ l+g Sevir.9G521000.1.p 73 SQYHGVRRRP-LGKWAAEVRDPV----KgVRVWLGTFATAEAAARAYDDAARDLRG 123 78********.8*********75....44************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.61E-14 | 73 | 133 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-20 | 73 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.524 | 74 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-11 | 74 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 74 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-31 | 74 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MCGGAILAEL IPSATAGGKG RKRAPAAAAK DDDFEAAFRE FDEDSDEEVV LVTERKAFAF 60 GAAAGARRSR RPSQYHGVRR RPLGKWAAEV RDPVKGVRVW LGTFATAEAA ARAYDDAARD 120 LRGAGAKLNF PTSSSATART SKRSAAGAAK AVPYVDLVDG DDVPDAAHAP SVKSEAETSD 180 SVSDASGCST LPDFSWQGMS ATDDGATWPA AGFHVELGRP SKRAGTEPQE PEEEEMAPPP 240 AASEESADML LDAFMFGDQF SFFNGGAYES LDGLFGGDAS LSLGNEGVGL WSFDDTVCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 74 | 131 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G521000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068551 | 2e-47 | BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds. | |||
GenBank | EU955715 | 2e-47 | EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds. | |||
GenBank | EU955981 | 2e-47 | EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds. | |||
GenBank | KJ727612 | 2e-47 | KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985468.1 | 0.0 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | K4AD64 | 0.0 | K4AD64_SETIT; Uncharacterized protein | ||||
STRING | Si036821m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G521000.1.p |