PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G486500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 621aa    MW: 66871.2 Da    PI: 6.8179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G486500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16279338155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +  +g  ++ ++++lg ++t+++Aa+a++ a++k++g
  Sevir.9G486500.2.p 279 SRYRGVTRHRWTGRYEAHLWDnSCRkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 338
                         79*******************766577788446**********99*************98 PP
2AP246.58.9e-15381432155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW ++I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sevir.9G486500.2.p 381 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 432
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-17279348IPR016177DNA-binding domain
CDDcd000182.83E-21279347No hitNo description
PfamPF008476.9E-13279338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15280347IPR001471AP2/ERF domain
SMARTSM003803.7E-28280352IPR001471AP2/ERF domain
PROSITE profilePS5103219.678280346IPR001471AP2/ERF domain
PRINTSPR003674.6E-6281292IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-17381441IPR016177DNA-binding domain
CDDcd000189.98E-24381442No hitNo description
PfamPF008471.1E-8381432IPR001471AP2/ERF domain
PROSITE profilePS5103218.597382440IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-18382440IPR001471AP2/ERF domain
SMARTSM003806.0E-31382446IPR001471AP2/ERF domain
PRINTSPR003674.6E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGEMASGGSN WLGFSLSPHT ALEVPSASEP APAHQAPPPS STTISSSSNN AAATSNFLFS  60
SMATPYPGYY CVGGAYGDGT SSAGVYYSHL PALPIRSDGS LCNMEGTMPS SPPKLEDFLG  120
GGNGGGQETA TYYSHQQGQE EVASRDYHQY QHHQLVPYTF QPLTEAEMLQ EESAPMDEAM  180
AAAKNYLLTS YGACYSNGEM HPLSLSMMSP GSQSSSCVSA APQQQQMVAV AAAASAAAAQ  240
GHSNGGGEQC VGRKRGTGKG GTKQPVHRKS IDTFGQRTSR YRGVTRHRWT GRYEAHLWDN  300
SCRKDGQTRK GRQVYLGGYD TEDKAARAYD LAALKYWGPA THINFPVENY QGELEEMKNM  360
TRQEFVAHLR RRSSGFSRGA SIYRGVTRHH QQGRWQSRIG RVAGNKDLYL GTFTTQEEAA  420
EAYDIAAIKF RGLNAVTNFD ITRYDVDKIL ESSTLLPVEE ARKVKVIEAA NGVPVIQLGG  480
RELNPTEEPS ANCRMVLHGS SQEAVHCPEA VDHQKGMMSD SNSSLHGIVG LDVECVAHDH  540
HLDVQGKSGG VNFSNSSSLV TSLGNSREGS PERLGLAMLY GKQQQNAVSL ASMSPWMPMP  600
APTAQHVVSH LPFFAAWADA *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G486500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985124.10.0AP2-like ethylene-responsive transcription factor ANT isoform X3
SwissprotQ389141e-135ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-134CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK4A7660.0K4A766_SETIT; Uncharacterized protein
STRINGSi034722m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  4. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  5. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  6. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  7. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  8. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  9. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  10. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  11. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  12. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  13. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]