PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G486500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 621aa MW: 66871.2 Da PI: 6.8179 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.4e-16 | 279 | 338 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g ++ ++++lg ++t+++Aa+a++ a++k++g Sevir.9G486500.2.p 279 SRYRGVTRHRWTGRYEAHLWDnSCRkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 338 79*******************766577788446**********99*************98 PP | |||||||
2 | AP2 | 46.5 | 8.9e-15 | 381 | 432 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW ++I + +k +lg+f t eeAa+a++ a+ k++g Sevir.9G486500.2.p 381 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 432 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-17 | 279 | 348 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.83E-21 | 279 | 347 | No hit | No description |
Pfam | PF00847 | 6.9E-13 | 279 | 338 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 280 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-28 | 280 | 352 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.678 | 280 | 346 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 281 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-17 | 381 | 441 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.98E-24 | 381 | 442 | No hit | No description |
Pfam | PF00847 | 1.1E-8 | 381 | 432 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.597 | 382 | 440 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-18 | 382 | 440 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-31 | 382 | 446 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 422 | 442 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MGEMASGGSN WLGFSLSPHT ALEVPSASEP APAHQAPPPS STTISSSSNN AAATSNFLFS 60 SMATPYPGYY CVGGAYGDGT SSAGVYYSHL PALPIRSDGS LCNMEGTMPS SPPKLEDFLG 120 GGNGGGQETA TYYSHQQGQE EVASRDYHQY QHHQLVPYTF QPLTEAEMLQ EESAPMDEAM 180 AAAKNYLLTS YGACYSNGEM HPLSLSMMSP GSQSSSCVSA APQQQQMVAV AAAASAAAAQ 240 GHSNGGGEQC VGRKRGTGKG GTKQPVHRKS IDTFGQRTSR YRGVTRHRWT GRYEAHLWDN 300 SCRKDGQTRK GRQVYLGGYD TEDKAARAYD LAALKYWGPA THINFPVENY QGELEEMKNM 360 TRQEFVAHLR RRSSGFSRGA SIYRGVTRHH QQGRWQSRIG RVAGNKDLYL GTFTTQEEAA 420 EAYDIAAIKF RGLNAVTNFD ITRYDVDKIL ESSTLLPVEE ARKVKVIEAA NGVPVIQLGG 480 RELNPTEEPS ANCRMVLHGS SQEAVHCPEA VDHQKGMMSD SNSSLHGIVG LDVECVAHDH 540 HLDVQGKSGG VNFSNSSSLV TSLGNSREGS PERLGLAMLY GKQQQNAVSL ASMSPWMPMP 600 APTAQHVVSH LPFFAAWADA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G486500.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985124.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X3 | ||||
Swissprot | Q38914 | 1e-135 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-134 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | K4A766 | 0.0 | K4A766_SETIT; Uncharacterized protein | ||||
STRING | Si034722m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-107 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G486500.2.p |