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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G467000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 363aa MW: 39707.2 Da PI: 7.499 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.9 | 1.1e-27 | 51 | 120 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k+ykk + +++++ Sevir.9G467000.2.p 51 WVREEILCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEYKKARSHARNN 120 ***************************************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.258 | 43 | 107 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 44 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-5 | 47 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.22E-28 | 49 | 114 | No hit | No description |
Pfam | PF13837 | 1.2E-19 | 50 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MLLSGPPPAP TPPLLLPESS GEDGGHDSSS RAAVVATGSA GSAPKRRAET WVREEILCLI 60 ALRREMDSHF NTSKSNKHLW EAISARMREQ GFDRSPTMCT DKWRNLLKEY KKARSHARNN 120 GGGAGGNGNA KMAYYKEIDD LLKRRGKASG SGGCVGSGSV SVNGAGKSPT SNSKIESYLQ 180 FTTDNGFEDA NIPFGPVEAA DAVATNGVNQ WNWRDTSTNG GDNQGTFGGR VIFVKWGDYT 240 KRIGIDGTAE AIKEAIKSAF GLRTRRAFWL EDEDEVVRTL DRDMPIGTYT LHLDDGVTIK 300 LCDANRMQTP EDKTFYTEDD FRGFLARRGW TLLREYGGYR NVESLDDLRS GVIYQGVRSL 360 GD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-38 | 45 | 137 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G467000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984957.1 | 0.0 | trihelix transcription factor GT-1 | ||||
Swissprot | Q9FX53 | 1e-129 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | K4AB64 | 0.0 | K4AB64_SETIT; Uncharacterized protein | ||||
STRING | Si036121m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-122 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G467000.2.p |
Publications ? help Back to Top | |||
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