PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G073700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 653aa MW: 67886.1 Da PI: 6.9799 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.7e-16 | 303 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Sevir.9G073700.2.p 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 362 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 47.9 | 3.4e-15 | 405 | 456 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g Sevir.9G073700.2.p 405 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 456 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.89E-20 | 303 | 371 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 303 | 362 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 303 | 371 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 304 | 370 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 304 | 370 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-29 | 304 | 376 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 305 | 316 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 405 | 465 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.52E-24 | 405 | 466 | No hit | No description |
Pfam | PF00847 | 1.7E-10 | 405 | 456 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 406 | 464 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 406 | 464 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-34 | 406 | 470 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 446 | 466 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MTSNSSQNLS SCSTGGSDAA VGGGGSWLGF SLSPHMAATM DGSDGSNAVQ MQQQHHGGLF 60 YPPVVSASPA GFCYALGGGG QDGVSTAGAN GGGGFYPGLS AMPLKSDGSL CIMEALHRSE 120 QDHHGVVVSS ASPKLEDFLG GGPAMALSLD NSSFYYGGGH GHGQDQAGYL QPLHCAGIPG 180 SGGHGHDVYG GHAQLVDEHS AAAMAASWFA ARGGDGYDVN GGAGAILPVQ GNLHPLALSM 240 SSGTGSQSSC VTMQAGARPH PHADAVAEYI GMDGSKKRGG GGAVQKQPTV HRKSIDTFGQ 300 RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA RAYDLAALKY 360 WGTSTHINFP IEDYREELEE MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ 420 ARIGRVSGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGLNAV TNFDITRYDV DKIMESNTLL 480 PGEQVRRIKD SEQASEGDAV ASAAAAVVQA GSCGAADTWR IQAAAALPGV ARADELHVKG 540 QHQDLLSSEA FSLLHDVVSV DAAGQGGGGG ASAHMSNASS LAPSVSNSRE QSPDRGVGGG 600 GGLAMLFTKP AAAASKLACP LPLGSWVSPS PVSARPGVSI AHLPMFAAWT DA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G073700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 0.0 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981612.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X4 | ||||
Swissprot | Q84Z02 | 1e-167 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A368SE93 | 0.0 | A0A368SE93_SETIT; Uncharacterized protein | ||||
STRING | Si034505m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G073700.2.p |
Publications ? help Back to Top | |||
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