PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G073700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 657aa    MW: 68345.7 Da    PI: 7.0557
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G073700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.7e-16303362155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sevir.9G073700.1.p 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 362
                         78*******************988886678446*************************98 PP
2AP241.33.7e-13405460155
                 AP2   1 sgykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV    r++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Sevir.9G073700.1.p 405 SIYRGVtsicRRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 460
                         569999999*************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-20303371No hitNo description
PfamPF008472.0E-12303362IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16303371IPR016177DNA-binding domain
SMARTSM003808.7E-29304376IPR001471AP2/ERF domain
PROSITE profilePS5103219.137304370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15304370IPR001471AP2/ERF domain
PRINTSPR003673.9E-6305316IPR001471AP2/ERF domain
CDDcd000181.50E-22405470No hitNo description
SMARTSM003801.5E-30406474IPR001471AP2/ERF domain
PROSITE profilePS5103219.058406468IPR001471AP2/ERF domain
PfamPF008472.1E-8406460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-17406468IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-15406469IPR016177DNA-binding domain
PRINTSPR003673.9E-6450470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MTSNSSQNLS SCSTGGSDAA VGGGGSWLGF SLSPHMAATM DGSDGSNAVQ MQQQHHGGLF  60
YPPVVSASPA GFCYALGGGG QDGVSTAGAN GGGGFYPGLS AMPLKSDGSL CIMEALHRSE  120
QDHHGVVVSS ASPKLEDFLG GGPAMALSLD NSSFYYGGGH GHGQDQAGYL QPLHCAGIPG  180
SGGHGHDVYG GHAQLVDEHS AAAMAASWFA ARGGDGYDVN GGAGAILPVQ GNLHPLALSM  240
SSGTGSQSSC VTMQAGARPH PHADAVAEYI GMDGSKKRGG GGAVQKQPTV HRKSIDTFGQ  300
RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA RAYDLAALKY  360
WGTSTHINFP IEDYREELEE MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TSICRRHHQH  420
GRWQARIGRV SGNKDLYLGT FSTQEEAAEA YDVAAIKFRG LNAVTNFDIT RYDVDKIMES  480
NTLLPGEQVR RIKDSEQASE GDAVASAAAA VVQAGSCGAA DTWRIQAAAA LPGVARADEL  540
HVKGQHQDLL SSEAFSLLHD VVSVDAAGQG GGGGASAHMS NASSLAPSVS NSREQSPDRG  600
VGGGGGLAML FTKPAAAASK LACPLPLGSW VSPSPVSARP GVSIAHLPMF AAWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G073700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-175AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012697985.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-165CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A368SEA70.0A0A368SEA7_SETIT; Uncharacterized protein
STRINGSi034505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]