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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.8G005300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
AP2 |
| Protein Properties |
Length: 416aa MW: 46070.5 Da PI: 4.8167 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.8G005300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 51.7 | 2.2e-16 | 80 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + ++ k ++++lg ++t+e Aa+a++ a++k++g
Sevir.8G005300.1.p 80 SVYRGVTRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 140
78*******************9988888445455*************************98 PP
|
| 2 | AP2 | 57 | 4.8e-18 | 183 | 235 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
s+y+GV +++ +grW+A+I + g +k+ +lg+f+t eeAaka++ a+ +++g+
Sevir.8G005300.1.p 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 235
89****99**********99966...3.6*************************995 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MERSPRPSPP PVSSPPSSSA SSSISTEDTP IPPRRKRART TQAKGAAPDK PKRPRKEAAR 60
HRHSKEDPNA TAASAGKRSS VYRGVTRHRW TGRFEAHLWD KHCLTSIQNK KKGRQVYLGA 120
YDTEEAAARA YDLAALKYWG PETVLNFPAE DYSNEMSEME GVSREEYLAS LRRRSSGFSR 180
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTFDTQEE AAKAYDLAAI EYRGANAVTN 240
FDISCYLDHP XLLAQLQQDP QVVPALNQEP QPDQSETTVQ ESDSSEEKTP DNNAEPXDNA 300
EPDANAEPXN NAEPLTVDDS IEESLWSPCM DYELDTMSRS NFGSSINLNE WFTDADLDSN 360
IGCLFDGCSX VDEGSKDGVG LADFSLFEEG DGKLKDVISD IEEGIHPPTM ISVCN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT038184 | 0.0 | BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds. |
| GenBank | KJ726910 | 0.0 | KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds. |
