PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G240300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 260aa    MW: 27575.3 Da    PI: 7.0092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G240300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13102147454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Sevir.6G240300.1.p 102 THVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAAAYIAEL 147
                         799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1697163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.05398147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-11101152No hitNo description
PfamPF000101.3E-10102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16102162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-12104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDELVVCPAS TACSSPSPAS FFSTAGHHQQ QQQELDFVSS EVLEQWLAID DCMDDETLMD  60
GAAWGVEGSR SPGNDLSGKP PAPAPKGRGR KPGPRTSGLA LTHVEAERQR RDKLNRRFCE  120
LRAAVPTVSR MDKASLLADA AAYIAELRGR VEQLEAEAKQ AAASAVAAAA TAAAPAQEKL  180
EVRMVGQEAA ALRLTTAARH APARLMLALR SLDLPVQHAC VCRVGSVTVQ DAVVDVPAAA  240
LRDERRLRAA LLNRLQQSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-19101160766Transcription factor MYC2
5gnj_B2e-19101160766Transcription factor MYC2
5gnj_E2e-19101160766Transcription factor MYC2
5gnj_F2e-19101160766Transcription factor MYC2
5gnj_G2e-19101160766Transcription factor MYC2
5gnj_I2e-19101160766Transcription factor MYC2
5gnj_M2e-19101160766Transcription factor MYC2
5gnj_N2e-19101160766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G240300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406793e-92BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
GenBankKJ7267873e-92KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974089.11e-147transcription factor MYC2
TrEMBLK3YLA31e-146K3YLA3_SETIT; Uncharacterized protein
STRINGSi015026m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-10bHLH family protein