 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sevir.6G204100.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
NF-YC |
Protein Properties |
Length: 208aa MW: 22102.2 Da PI: 5.9297 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.6G204100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 169.8 | 3.2e-53 | 68 | 171 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql+ fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt++
Sevir.6G204100.1.p 68 QLQIFWNEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTEV 158
89******99999****************************************************************************** PP
NF-YC 89 fdflvdivprdel 101
fdflvdivprde
Sevir.6G204100.1.p 159 FDFLVDIVPRDEA 171
***********86 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MEPKSTTPPP VMGAPVAYPP PPAAAYPAGP YAHAPAAALY PPPPPPPPPH PAAASAAAGQ 60 LGPAAQQQLQ IFWNEQYREI EATTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA 120 CEMFILELTH RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPRDE AKDAEAAAAA 180 GMGAGIPHPG AGMPATDPMG YYYVQPQ*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | FP092473 | 1e-170 | FP092473.1 Phyllostachys edulis cDNA clone: bphyst032d09, full insert sequence. |