PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G199200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 26375.5 Da PI: 7.7677 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.1 | 1.9e-38 | 35 | 92 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Sevir.6G199200.1.p 35 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 92 6789**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-32 | 38 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MQGAAAEPGR RLAQQQFAGV DLRRPKGYAV PAPAEGDPCP RCESRDTKFC YYNNYNTSQP 60 RHFCKGCRRY WTKGGTLRNV PVGGGTRKKP SSSPPSSYAA AANANKPKKP SKKKRRVVVV 120 APQDPVAAPV AAPTLVAAPA ADSAKTTTNE TTTTTTNETT ATTATPTTTD AASEITTELV 180 VPAAEEEDSL AHLLQPDVAL GLGTSDFPAA GKALDLEPDS FEWPAAFDLG GACWGSAGFA 240 DPDPAGLFLN LP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 115 | KKKRR |
2 | 111 | 116 | KKKRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G199200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965859 | 2e-86 | EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds. | |||
GenBank | EU969388 | 2e-86 | EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973764.1 | 0.0 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 2e-82 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A368RN31 | 0.0 | A0A368RN31_SETIT; Uncharacterized protein | ||||
STRING | LPERR08G15690.1 | 2e-79 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-29 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G199200.1.p |
Publications ? help Back to Top | |||
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