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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.6G025900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NF-YC |
Protein Properties |
Length: 312aa MW: 33484.9 Da PI: 4.6382 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.6G025900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 152.8 | 6.2e-48 | 152 | 254 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql++fw+ q e+atd+k h+lPlarikki+kadedvkmi+aeaPv+++kace+fileltlrswlh+e +krrt+++sd++aa+ ++
Sevir.6G025900.1.p 152 QLQAFWAGQlaeAEQATDLKVHSLPLARIKKIMKADEDVKMIAAEAPVVFAKACEMFILELTLRSWLHTEGTKRRTMQRSDVSAAIMANEM 242
89*****9988789***************************************************************************** PP
NF-YC 89 fdflvdivprde 100
fdfl+d+ p+++
Sevir.6G025900.1.p 243 FDFLMDVTPTEQ 254
********9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDQHSQINKV VGGATNVDTP AASYALTPFL QRVPMESVPP SSVGAAFLPF SASQGSVAYP 60 SAILPLLSNQ QPSQIDPFEA ATNDAAYALT ALTTYNHQPE ALASVPPSSS AGATFLPAPA 120 SQGAPTAYQA AIPPPLSNQH QAALLQKLQQ QQLQAFWAGQ LAEAEQATDL KVHSLPLARI 180 KKIMKADEDV KMIAAEAPVV FAKACEMFIL ELTLRSWLHT EGTKRRTMQR SDVSAAIMAN 240 EMFDFLMDVT PTEQQTNGDG VLPPPPPPQT TAGQVPFPMH VPFPMYANQQ PPFMWPTPEY 300 QQQQNPDGGN E*
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Functional Description ? help
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Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK361494 | 1e-33 | AK361494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141P02. |
GenBank | AK372295 | 1e-33 | AK372295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2149D08. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Li S, et al.
HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] - Mei X, et al.
Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] - Baud S, et al.
Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]
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