PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G430700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 378aa    MW: 40521.9 Da    PI: 6.7047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G430700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.5e-1220521244
                        HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44
                        tf  R++g+ KKA EL +LCd++va++ ++++g
  Sevir.5G430700.1.p 20 TFNGRKEGLKKKARELAILCDVDVALVCAGPRG 52
                        999***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-16180IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-10161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.376152IPR002100Transcription factor, MADS-box
CDDcd002662.22E-18380No hitNo description
PfamPF003199.2E-121852IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MPRRKIQMGL IGKAGSLTRT FNGRKEGLKK KARELAILCD VDVALVCAGP RGGAPADVWE  60
FGAGVIDRYR RLPADKRAKH THLGYLNIEL GKEKARLAKE RQEGPKELAS PSAAVLKGVN  120
LEELLGSIDA ALLATAKRRK ALGMPDDGIA GGGQLRQAAV VPLEQGVRLA GDADLDDMEA  180
WVDELTWHGV EPHPLNASMT MQPASGGVQY INGVEPRPLN ASMAQPASGA QYINSGSMCM  240
AGNQYLQQVG GNGENAHGQL LPWDAYQLHN TASCPDHGFF QYTGSNCSYS DMSGCPQMPV  300
PSNANAYNGW FDQAMWGADE SSCDAAVPLW DSAVRFRAVS IRCARSGFRS PEVLADERGS  360
RILLSSPSEM CHSMIQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G430700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3XQV20.0K3XQV2_SETIT; Uncharacterized protein
STRINGSi004289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.19e-12AGAMOUS-like 24