PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G386500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 602aa    MW: 64588.1 Da    PI: 8.3215
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G386500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-103744111954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Sevir.5G386500.1.p 374 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 411
                         554459******************************88 PP
2BELL93.42.2e-30240309372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +e q kk++L+s++eeV+krY+ y++q+qtvi+sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Sevir.5G386500.1.p 240 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVINSFETVAGFSNAAPFAAMALRAMAKHFKCLKGMILSQL 309
                         5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-36170307IPR006563POX domain
PfamPF075263.8E-36175305IPR006563POX domain
PROSITE profilePS5007112.228352415IPR001356Homeobox domain
SMARTSM003897.4E-11355419IPR001356Homeobox domain
CDDcd000862.09E-13355416No hitNo description
SuperFamilySSF466894.71E-17357423IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28358419IPR009057Homeodomain-like
PfamPF059206.4E-19372411IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSSAAGGYGA GAGSGTEPHC HGRGHGDFPL HHHAQHVAAQ QLYHVPQHSR REKLRFPPDD  60
SPPHASASGP QHQNHHQHQQ HAGAGWPPPP PGFYSYATSS TSSYSPHSPT LAGQAQLVVA  120
PHGHGLAAPL SSQIPTQNFA LSLSSSSSNP PPAQARRTLA APSGPFGPFT GYAAVLGRSR  180
FLAPAEKLLE EICDVGGAAP RVDRSASDEG LLDADPMEGI DHDMDGADRA ASDAGPISGA  240
EQQWKKTRLI SMMEEVCKRY RLYYQQVQTV INSFETVAGF SNAAPFAAMA LRAMAKHFKC  300
LKGMILSQLR NASKAAASKE GFSKDIAMFG LASGSAAALQ RASSVAAFGQ PHNIWRPQRG  360
LPERAVSVLR AWLFEHFLHP YPTDGDKQML AKQTGLTRNQ VSNWFINARV RLWKPMVEEI  420
HNLEMRQVHK HPALDKSQRA MHHQTQHSSE SSGKPSDPSD SQLGQSSSIT RNHAIPASQG  480
FPDELSQMSH SIQQGQVTFA YNGLSTPQHQ HSLASSQHHQ QLGSMSGIGG AGNGGVSLTL  540
GLHQNNRVCI AEPLPASLPP NLAHRFGLEE VSDAYMMGSF GGQDRHFGKE MGGHLVHDFV  600
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16361419563Homeobox protein Meis2
3k2a_B1e-16361419563Homeobox protein Meis2
4xrs_A1e-16361418158Homeobox protein Meis1
4xrs_B1e-16361418158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G386500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGSi000753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.17e-69BEL1-like homeodomain 8