PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G361600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 526aa MW: 56646.6 Da PI: 9.2113 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3.1e-09 | 168 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+w++ +g+++A+++d + k+k+ g f+++e Aa ++ a++k++g Sevir.5G361600.2.p 168 SIYRGVTWHRVSGKFEAHLWDRHARSpaKNKKGKQGAFDSEEAAAHTYDLAALKYWG 224 57*******************43355887755555********************98 PP | |||||||
2 | AP2 | 51.4 | 2.6e-16 | 267 | 319 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV ++ +grW+A+I ng +k+ +lg fgt eeAa+a++ a+++l+g+ Sevir.5G361600.2.p 267 SEYRGVAKHHHNGRWEARIGY--ANG-KKYLYLGIFGTQEEAARAYDLAALELRGH 319 569***************644..366.8**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.03E-12 | 168 | 231 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-12 | 168 | 233 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-6 | 168 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.923 | 169 | 232 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-11 | 169 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-12 | 169 | 238 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-16 | 267 | 328 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.28E-19 | 267 | 328 | No hit | No description |
PROSITE profile | PS51032 | 17.477 | 268 | 326 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-13 | 268 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 268 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-25 | 268 | 332 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MVNPSSQKSR WCGEPFPPPY RQGSPALSGS GPDLLPISSK RSHPPLCKSA VSTLLFTTAD 60 SPSRSNVEGQ RGRSRAKKAK PRPAGLNPGP LAMTRPHCAA TSLSPSSRVG SSSLSCVSSS 120 ASSSSGSCYV PASWPPKCGS KKKRSNRRRA KNGAGGSADA VVPRRNSSIY RGVTWHRVSG 180 KFEAHLWDRH ARSPAKNKKG KQGAFDSEEA AAHTYDLAAL KYWGSDCKLN FTLESYKQEH 240 ERMQRMTREA YLATLRRRSS CFSRGASEYR GVAKHHHNGR WEARIGYANG KKYLYLGIFG 300 TQEEAARAYD LAALELRGHA AITNFDISSY ADYLQPPPVS KAQARSALKP KAEPVDEAPL 360 LPTKTATGWT TPLLTPKPEP EDEEVEPLVA ALPPGLVLRD VDHAIAEMPP GPVLRDADDV 420 DHAIAEILPA LGMDPADFEA RYPARALGWL PDDDHHQLRA LPLPDAGRFE DDIETLFDAP 480 GSAGPGQGEV VHVQLPAAVE PDASGADAVS YAAATISSLA SGRWW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G361600.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949353 | 3e-50 | EU949353.1 Zea mays clone 402937 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970326.2 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A368RCF7 | 0.0 | A0A368RCF7_SETIT; Uncharacterized protein | ||||
STRING | Si004222m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 3e-72 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G361600.2.p |