PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G361600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 526aa    MW: 56646.6 Da    PI: 9.2113
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G361600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-09168224155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+w++ +g+++A+++d   +   k+k+   g f+++e Aa  ++ a++k++g
  Sevir.5G361600.2.p 168 SIYRGVTWHRVSGKFEAHLWDRHARSpaKNKKGKQGAFDSEEAAAHTYDLAALKYWG 224
                         57*******************43355887755555********************98 PP
2AP251.42.6e-16267319156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s y+GV  ++ +grW+A+I     ng +k+ +lg fgt eeAa+a++ a+++l+g+
  Sevir.5G361600.2.p 267 SEYRGVAKHHHNGRWEARIGY--ANG-KKYLYLGIFGTQEEAARAYDLAALELRGH 319
                         569***************644..366.8**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-12168231No hitNo description
SuperFamilySSF541711.57E-12168233IPR016177DNA-binding domain
PfamPF008472.6E-6168224IPR001471AP2/ERF domain
PROSITE profilePS5103215.923169232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-11169232IPR001471AP2/ERF domain
SMARTSM003802.1E-12169238IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16267328IPR016177DNA-binding domain
CDDcd000181.28E-19267328No hitNo description
PROSITE profilePS5103217.477268326IPR001471AP2/ERF domain
PfamPF008479.8E-13268319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17268326IPR001471AP2/ERF domain
SMARTSM003807.0E-25268332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVNPSSQKSR WCGEPFPPPY RQGSPALSGS GPDLLPISSK RSHPPLCKSA VSTLLFTTAD  60
SPSRSNVEGQ RGRSRAKKAK PRPAGLNPGP LAMTRPHCAA TSLSPSSRVG SSSLSCVSSS  120
ASSSSGSCYV PASWPPKCGS KKKRSNRRRA KNGAGGSADA VVPRRNSSIY RGVTWHRVSG  180
KFEAHLWDRH ARSPAKNKKG KQGAFDSEEA AAHTYDLAAL KYWGSDCKLN FTLESYKQEH  240
ERMQRMTREA YLATLRRRSS CFSRGASEYR GVAKHHHNGR WEARIGYANG KKYLYLGIFG  300
TQEEAARAYD LAALELRGHA AITNFDISSY ADYLQPPPVS KAQARSALKP KAEPVDEAPL  360
LPTKTATGWT TPLLTPKPEP EDEEVEPLVA ALPPGLVLRD VDHAIAEMPP GPVLRDADDV  420
DHAIAEILPA LGMDPADFEA RYPARALGWL PDDDHHQLRA LPLPDAGRFE DDIETLFDAP  480
GSAGPGQGEV VHVQLPAAVE PDASGADAVS YAAATISSLA SGRWW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G361600.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493533e-50EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970326.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A368RCF70.0A0A368RCF7_SETIT; Uncharacterized protein
STRINGSi004222m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-72AP2 family protein