 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sevir.4G280800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NF-YC |
| Protein Properties |
Length: 257aa MW: 28493.1 Da PI: 4.7999 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.4G280800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 176 | 3.6e-55 | 81 | 185 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql++fw+++ ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
Sevir.4G280800.1.p 81 QLQQFWAERladIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDI 171
89*****98888******************************************************************************* PP
NF-YC 89 fdflvdivprdelk 102
+dflvdivprde+k
Sevir.4G280800.1.p 172 YDFLVDIVPRDEMK 185
***********975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MEPSSQPQPA MGVAAGGSQE YPAPAYPPAA TIAAPSAVPP AGLQPGQPFP ANPAQMSAQH 60
QIVYQQAQQF HQQLQQQQQR QLQQFWAERL ADIEQTTDFK NHTLPLARIK KIMKADEDVR 120
MISAEAPVVF AKACEIFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIVP 180
RDEMKEEGVG LPRAGLPPMG APADAYPYYY MPQQQVPGAG MVYGAQQGHP VTYLWQEPQE 240
QQEQPPEDQQ PLHGSG*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
