PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G032600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 448aa    MW: 47987.5 Da    PI: 7.9396
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G032600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1582141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Sevir.4G032600.1.p  82 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 141
                         789******************888855566447*************************98 PP
2AP252.11.6e-16184235155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Sevir.4G032600.1.p 184 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 235
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-1682150IPR016177DNA-binding domain
PfamPF008474.8E-1282141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1583149IPR001471AP2/ERF domain
PROSITE profilePS5103219.57283149IPR001471AP2/ERF domain
SMARTSM003803.5E-2583155IPR001471AP2/ERF domain
PRINTSPR003673.5E-58495IPR001471AP2/ERF domain
CDDcd000182.68E-23184245No hitNo description
PfamPF008475.8E-12184235IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18184245IPR016177DNA-binding domain
PROSITE profilePS5103218.953185243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18185244IPR001471AP2/ERF domain
SMARTSM003802.7E-26185249IPR001471AP2/ERF domain
PRINTSPR003673.5E-5225245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
METYSGLVKD ELHGIGGGQG LYCGATPRAA PAMMTGGARD GVVKSVKRRK REPSSVVTVS  60
NGKEEAAGGD KAAGSNAAKR SSRFRGVSRH RWTGRFEAHL WDKGTWNPTQ KKKGKQVYLG  120
AYNEEEAAAR AYDLAALKYW GPSTYTNFPV VDYEKELKVM QNVSKEEYLA SIRRKSNGFS  180
RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT  240
NFDLSTYIRW LKPAAAAGDD GGTPTSGVKP NIPPSLCLQA AGGLLQHPHA GAAAGMLQVD  300
VDLYRGHLAA AQQGASSFSG LDDVGSVYAA GPSPTAVCGR PSPSSSTTAL SLLLRSSVFQ  360
ELVARNAGAA QQQQHVPGDH GAAVSDVVLD AKVEHEEPLG RPDEEGEIGE EMYGAAGAAE  420
EAFACSMYDI DDSFARIEQS FWNCLSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KSVKRRK
2107115PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G032600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599896e-73EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y0Z50.0K3Y0Z5_SETIT; Uncharacterized protein
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-83AP2 family protein