PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G044600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WOX | ||||||||
Protein Properties | Length: 276aa MW: 28732.6 Da PI: 7.8301 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 24 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+psa+++++++++l +++ ++V++WFqN++a++++ Sevir.3G044600.1.p 24 TRWCPTPEQLMILEEMYRGgLRTPSASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 83 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.4 | 6.6e-38 | 23 | 84 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Sevir.3G044600.1.p 23 STRWCPTPEQLMILEEMYRGGLRTPSASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 84 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-4 | 21 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.57E-5 | 24 | 84 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-10 | 24 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.4E-18 | 24 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-7 | 25 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.944 | 29 | 84 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MPSQQGQTQA QAQAAQQPVV AGSTRWCPTP EQLMILEEMY RGGLRTPSAS QIQQITAHLA 60 CYGRIEGKNV FYWFQNHKAR DRQKLRRRLC MSHHLLSCAQ YYAAAHHGHH GFLAAAPPAL 120 PAAPYGGCGV FDQTAAGQLL SPTSPTPAAA AAAAAAAAAY GYYYPATAAF APAPPSRCVG 180 AATPPSPTQL FHYQAGGGGG IAPVEALGRP EYSLGKLDNF GVALDDVVVS SAAAAAADMA 240 PPGFEVAPPP AAFCRPLKTL DLFPGGLKEE QHDVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G044600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 1e-128 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. | |||
GenBank | KJ726946 | 1e-128 | KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960326.1 | 1e-148 | putative WUSCHEL-related homeobox 2 | ||||
Swissprot | A2XZR3 | 5e-69 | WOX2_ORYSI; Putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | K3Z8S4 | 1e-147 | K3Z8S4_SETIT; Uncharacterized protein | ||||
STRING | Si022944m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 7e-40 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G044600.1.p |