PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G411500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 669aa MW: 73344.2 Da PI: 4.5084 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.3e-14 | 35 | 79 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W+teEd l ++++G+++W+ Ia+ + +t+ qc+ rw++yl Sevir.2G411500.2.p 35 SWSTEEDSVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 79 6****************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.6e-13 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Sevir.2G411500.2.p 85 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 128 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.436 | 28 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-26 | 32 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 32 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-12 | 35 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 36 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.6E-14 | 36 | 96 | No hit | No description |
SMART | SM00717 | 4.7E-14 | 84 | 132 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.039 | 84 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-19 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.13E-10 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MATGPDLSSS SGAAAAAVPD AAPGAAAKKD RHIVSWSTEE DSVLRAQIAL HGTDNWTIIA 60 AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ KLLGNRWTEI AKVVSGRTDN 120 AVKNRFSTLC KRRAKDDEPF QENGTPCSNT NAKRVLTQTG CVTPGAASSS APMKQMRSCS 180 SDLKENIVPN MRLFGQEKGT HQDARQPLAT LSSNNQQNVN TVKSHNLVTT TTKPLLGPEQ 240 HCVKQEGNFM NKDDPKVAIL LQQADLLCSL ATKIKTDDTS QSMDEAWQQL QHHLVKKDDN 300 GMSENSESGI ASLLEELDDL IVDPYESKEE DEQKIREQNG QRQTDVENEH CTGPSQASME 360 VTSNMVPDEM MEDHTVDNCK EVSNLCTNML SRSTEACPDA KIPASENLSE VAEDSRLQRV 420 ESTSPGLTDF DDFIIDPYEN TEEDEQNIRE QNGQIDAHDN QSYGHSQATM ELTPGVAPDE 480 LMEACPADSC KEDSSLCRNV LSGSMEPCPG EEKAASTNLS EVAEESRLQC IESTSPVLAN 540 FQTKECGETP APEKPNEVVE DSRLQCVEFT SPSHTVLRAK AAGAETFASP RSTVVAKDSK 600 LPSMEFTSPA HTVATFQPYA DYADDMPTPK FTASERNFLL SVIELTSPGS RPETSQQPSC 660 KRALLNSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 36 | 133 | 10 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G411500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958398.1 | 0.0 | transcription factor MYB88 isoform X1 | ||||
TrEMBL | K3ZRB2 | 0.0 | K3ZRB2_SETIT; Uncharacterized protein | ||||
STRING | Si029124m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 7e-86 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G411500.2.p |