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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.2G029000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
AP2 |
Protein Properties |
Length: 648aa MW: 67624.9 Da PI: 7.4091 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.2G029000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 51 | 3.6e-16 | 281 | 340 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g
Sevir.2G029000.1.p 281 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 340
78*******************988886678446*************************98 PP
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2 | AP2 | 47.5 | 4.5e-15 | 385 | 434 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g
Sevir.2G029000.1.p 385 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 434
9***************999754...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 648 aa
Download sequence Send
to blast |
MTNNSSNSNG NGTNAAASGW LGFSLSPHMT SAMDDHQQHQ HHVQQQQQHG LFFPSVTAAA 60 AAYGLGLGAG DAAAVAASAP SYYTPQLASM PLKSDGSLCI MEALRRSDQD HHGPKLEDFL 120 GAAQSQAMAL SLDNAAAAAA ASSFYYYGGG AGTGGHHHGF LQPCADLYGG PSAAALVADD 180 EATAAATAMA SWVAARASAA ESGVHSAAAA GHQHHHHALA LSMSSGSLSS CVTAHPGEYG 240 MVAAAGAGAM VDGGRKRGVA AGQKQPVHHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW 300 DNSCKKEGQT RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE DYQEELEEMK 360 NMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVSGNKDL YLGTFSTQEE 420 AAEAYDIAAI KFRGLNAVTN FDITRYDVDK IMASNTLLPG ELARRKKDDE VAAIAPADGG 480 AGGVTTAALA AAAHQAANGS AAAADTWKVA AALAAAEHGH GAHHHHHDVL SGAEAFSVLH 540 DLVTAADGGG HHGAGAAQHM PMSSASSLVT SLGNSREGSP DRGGGLSMLF SKPPAPQQQQ 600 QQQAANNKPM MSPLMPLGSW ASPASARGAA AAVSIAHMPV FAAWTDA*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT088263 | 0.0 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |