PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G224600.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 818aa    MW: 90451 Da    PI: 9.2696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G224600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-103153961097
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +  +  l +p   a + +    +++++ led++ r+ +v+l  +  +g+  + +GW  Fv+++ +k g+f++F+++ r++f   v++f
  Sevir.1G224600.4.p 315 NYFEEFLLIPPAVAPKLEDL--TNRDVYLEDSEKRRSKVRL--SVVDGSLAFHQGWDIFVSDHLIKLGEFLLFEYTARKRF--SVRIF 396
                         44555688999998888655..4568***************..99999999************************998999..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278306399IPR003340B3 DNA binding domain
CDDcd100177.51E-10307396No hitNo description
Gene3DG3DSA:2.40.330.105.4E-14308399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-14308401IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4309399IPR003340B3 DNA binding domain
PfamPF023626.6E-8313396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MRGGVSGVTN GKTSTAAILE MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK  60
VSTTSLEKMR KKEKLCNANN KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA  120
ANSKERKILS GHDGVKKSVE VSTAFFGKEK KGKRLNKTIN EELQSDEDEE EGVWNYDGKV  180
KNGKVATAFS EEEKRKRRPN NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA  240
SNVSKEKKMD TSSGSNYKKR KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE  300
KNRQAPFTFF KFIYNYFEEF LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL  360
AFHQGWDIFV SDHLIKLGEF LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG  420
PPQDNNNGSL IDRQCKTKGT SPLHSKKKTV ILISDSGISA DNEDMLNITS DADSTHHVTI  480
NTNKDLKRVQ SGVGNLPDGV CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE  540
KHDLDEDLMR KQGINSIPSD SITAVGKHQN HSETIVSQNI YRKYAAPGGF RCLEKWTKAI  600
VNSPATLDGT VPIEPENTRK TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE  660
PLSADRVSNF RHVGTDTDHS INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA  720
VLGEYGALGR NPAGPEGTCA FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV  780
QLETNMDQVE LVGSSVCSQS SNVAMHANHV VVHEPGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G224600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703636.10.0B3 domain-containing protein Os02g0598200 isoform X1
TrEMBLK3YPY40.0K3YPY4_SETIT; Uncharacterized protein
STRINGSi016245m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-09B3 family protein