PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G076200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 313aa    MW: 33317.8 Da    PI: 6.3103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G076200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-162569145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        kri+  s  +v fskRrng+ KKA EL+vL++a  a+++fs+ +k
  Sevir.1G076200.1.p 25 KRIKCASATHVCFSKRRNGLYKKATELCVLTGASLAIVVFSPADK 69
                        68999999*********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.1E-211787IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-201776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.0111777IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-131939IPR002100Transcription factor, MADS-box
PfamPF003199.2E-192672IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-133954IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-135475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVAVAEAGGE RKRKKTLGRQ KIEIKRIKCA SATHVCFSKR RNGLYKKATE LCVLTGASLA  60
IVVFSPADKP YSLGYPSVQA VLEGYLDPAS YVPPTAAEAA ALAAAAREYE CERERLDKAL  120
EAEKRRRIAL DAAARAAGVW TGDDDVRLKG MPELVAMLAA LERVQAEANM MQRAHEVIAE  180
EAIMMQQCAA AAGAGDAAIS AFQFEYPGAG TFTADGAGGS SYYQEAMGAQ MMLMGGNVVS  240
HGAHAPLPFA PMLLPPDLPP QPHFNYGSDH YNIAGYGYGY GYDIVDGSNH GAAYEMEGFH  300
GTRTTTTCNF FG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014RKRKK
2123127KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G076200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954705.21e-174MADS-box protein FLOWERING LOCUS C
TrEMBLK3YYE91e-173K3YYE9_SETIT; Uncharacterized protein
STRINGSi019299m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-23AGAMOUS-like 61