PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G485100.1.p
Common NameLOC101755278, SETIT_034517mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 688aa    MW: 73746.9 Da    PI: 6.8586
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G485100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Seita.9G485100.1.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                         79*******************.********************************8 PP
2Response_reg77.64.5e-26181261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll++   e  +lp+i+++a +  + + + 
  Seita.9G485100.1.p  18 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLEHVGLEM-DLPVIMMSADSRTDIVMKG 106
                         89*********************.***************99999***********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k Ga d+l Kp+ +eel +
  Seita.9G485100.1.p 107 IKHGACDYLIKPVRMEELKN 126
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1791670IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4215151No hitNo description
SuperFamilySSF521721.57E-3615140IPR011006CheY-like superfamily
SMARTSM004481.8E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.03717132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.03E-2719131No hitNo description
SuperFamilySSF466899.14E-20199259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
TIGRFAMsTIGR015573.0E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAAAAEARGA DFPVGMKVLV VDDDPTCLVV LKRMLLECRY DVTTCPQATR ALTMLRENRR  60
GFDVIISDVH MPDMDGFRLL EHVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKFNENK DHEHSGSLDD TDRNRATNND NEYASSANDG GDGSWKSQKK  180
KREKEEDEAD MENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIPHP FVAPASSAKV APLGGLEFQA LAASGQIPPQ  300
ALAALQDELL GRPTSSLALP GRDQSSLRLA AIKGNKPHGE REIAFGQPIY KSQSTAYGAC  360
CSPAGGGFPS FAAWPNNKLG MADSPSALGN VSNPQNSNLL LHELQQQPDT LLPGTLHNID  420
VKPSGIVMPS QSLNAFPASE GISPNQNPLV IASQSPSFLA SIPPSMKHEP LLASSSPSNS  480
LLGGIDMVNQ ASTSQPLIST HGANLPGLMN RSSNAMPSPA ISNFQSGNNR YMVNQNAMGV  540
SSRTPDVLKT ESTDSLSRSY GYIGGGTSVD SGLLSSQIKN PQYGLLQSPN DGTGSWSPSQ  600
DIDSYGNTLG QGHPGSSSSN FQSSNVALGK LPDQGRGRNH GFVGKGNCIP SRFAVDEVES  660
PTNNLSHSIG SSRDIVNPDI FGFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G485100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985153.10.0two-component response regulator ORR21
RefseqXP_022678877.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLK4A6L20.0K4A6L2_SETIT; Two-component response regulator
STRINGSi034517m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2