PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G231000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 333aa    MW: 38099 Da    PI: 6.0532
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G231000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26179233156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k rl Wt +LH++F+ av++L Gs+kA+P +ile+mkvk Lt+e+v+SHLQkYRl+
  Seita.9G231000.1.p 179 KSRLSWTMQLHRQFIAAVNSL-GSDKAVPNKILEIMKVKHLTREQVASHLQKYRLH 233
                         68*******************.********************************97 PP
2Response_reg56.41.6e-19121201109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl++d + + +++++++l k  y +v++ ++ +ea+  +  +++++Dli++D+  p+ d l +l+e +++   +p ++++++g+ +++ ++
  Seita.9G231000.1.p  12 VLVIDNNSSYLSVMEELLIKCSY-KVTTYKNVREAMSFIygNQQTVDLIICDVFFPTEDSLLILQEVTSKF-GIPTVIMSSNGDTATVMKY 100
                         89*********************.***************877777**********************9999.9****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga+dfl Kp  +eel +
  Seita.9G231000.1.p 101 ITNGASDFLIKPLRIEELKN 120
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.83E-268134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.2E-289141No hitNo description
SMARTSM004481.7E-1510122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.48811126IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-1512120IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.14E-1713126No hitNo description
PROSITE profilePS5129411.269176235IPR017930Myb domain
SuperFamilySSF466894.3E-18177236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-26178235IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24179234IPR006447Myb domain, plants
PfamPF002494.7E-7181231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDQALWPSGL RVLVIDNNSS YLSVMEELLI KCSYKVTTYK NVREAMSFIY GNQQTVDLII  60
CDVFFPTEDS LLILQEVTSK FGIPTVIMSS NGDTATVMKY ITNGASDFLI KPLRIEELKN  120
IWQHVFRKQI GAEHRKCNNA EHVDQLPYRT MGITEATATL DSEIRENNGT VTDIRDLRKS  180
RLSWTMQLHR QFIAAVNSLG SDKAVPNKIL EIMKVKHLTR EQVASHLQKY RLHQRNSSQR  240
LHKDGAPSSS SHESSILRTQ LNTSSNSLYF DQDGCMEITD YSLPMDDLSS GLDCMLGERE  300
RNNYSPEGFQ NFRWDPDKQG YETTYLWNFE AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15178238464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G231000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679340.10.0two-component response regulator EHD1
SwissprotQ7Y0W31e-143EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A368SJM80.0A0A368SJM8_SETIT; Uncharacterized protein
STRINGSi039992m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-55response regulator 2