PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G040600.1.p
Common NameSETIT_039443mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 454aa    MW: 49120.2 Da    PI: 6.9442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G040600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM873.5e-272333653128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatg 87 
                         +G+rF+Ptdeel+ +yL+ k +g+k+++ +++k++d+y+ +P++ ++++   +  wy Fs+r++ky++g r+ r+      ++ gyWk+  
  Seita.9G040600.1.p 233 AGVRFQPTDEELI-FYLRLKHAGHKMPV-DFFKDFDVYHEHPETSRAACGVVNGCWYAFSPRNRKYKNGGRPARSvfdasgVQVGYWKSNT 321
                         7************.**************.99*************98666666679*******************7688888889******* PP

                 NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k  +vl+    +g+lvg  ++L+f+ g++pkg++t W m+ey++
  Seita.9G040600.1.p 322 KLAPVLAGgkaDGALVGEVTSLTFHLGQQPKGTQTPWKMKEYAI 365
                         ******976666667***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.108231390IPR003441NAC domain
SuperFamilySSF1019414.58E-35233390IPR003441NAC domain
PfamPF023659.2E-15233364IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTGTFFPPPA MVEPPYYWHP QTQPGFPPRF APVPLPFAQG VMPPPVPVPV QITRAEPSYY  60
HPQIQGSVAS GSAAEAVAIV HAVPDTQKAQ EATAPAHRRR GRPRKTDTAA VAAAKPVIKK  120
PKRATVRSSR AAAPQPTGSS VAGSATMAGQ VQIHQQQDQA ASSAVEFQVQ HPDQAASVIA  180
VATSNQQTAP CTTNPMALLC DQEQWQLQPS CSNILSAGDQ AAAAGPYADT SVAGVRFQPT  240
DEELIFYLRL KHAGHKMPVD FFKDFDVYHE HPETSRAACG VVNGCWYAFS PRNRKYKNGG  300
RPARSVFDAS GVQVGYWKSN TKLAPVLAGG KADGALVGEV TSLTFHLGQQ PKGTQTPWKM  360
KEYAIPQNQH APDGSAMRLN DWVVCKLFYK ERVIKNAAAE EDQLSEAGEN DVWAEGDEGT  420
WRVPVVQTLG NSEQDLCVDY QIETNADDYL PWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-2323439118169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104RRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G040600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AKM00.0K4AKM0_SETIT; Uncharacterized protein
STRINGSi039443m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-26NAC domain containing protein 2