PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G222300.1.p
Common NameLOC101766026, SETIT_011756mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LFY
Protein Properties Length: 390aa    MW: 41913.7 Da    PI: 9.0357
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G222300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY529.31.5e-16113751383
             FLO_LFY   1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddl 89 
                         mdp++ fsa+  f+wd       ppa++++    +++p +   a    + rele+l+ +yGvr +tva+i+elGft+stL++m+++eldd+
  Seita.7G222300.1.p   1 MDPNDaFSAAhPFRWDLG-----PPAHAAPAPPPPPPP-SLPLAPPVGAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDDM 85 
                         777654776559****53.....222332222222222.333444556689**************************************** PP

             FLO_LFY  90 mkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekk 180
                         m++l+ +fr+d+l+Ger+G++aa+raer r+++      r      +  ++lda+sqe+ls+e++     aa+sgg    ea+  +++ kk
  Seita.7G222300.1.p  86 MAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HAGSTLDAASQEVLSDERD-----AAASGGVADDEAGRRMVTGKK 163
                         ********************************965...455.....35678***********987.....555666555555555555544 PP

             FLO_LFY 181 seeekkkaskk.kqkrkkkkelkse.....edede....eeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCre 261
                         + ++   a+k  k++rk++ +   +      ded     e++e++ + g+g +g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr 
  Seita.7G222300.1.p 164 QAKKGGAARKGkKARRKRELRPL-DvledeGDEDGgcasESTESSAGGGGGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRV 253
                         44444333333133333332222.1343332222211102222333334667778************************************ PP

             FLO_LFY 262 fLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqg 352
                         fLlqvq+iak  G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenvGawrqacy+plv+iaar+g
  Seita.7G222300.1.p 254 FLLQVQSIAKLGGHKAPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENVGAWRQACYAPLVEIAARHG 344
                         ******************************************************************************************* PP

             FLO_LFY 353 wdidavfnahprLsiWYvPtkLrqLChlers 383
                         +d+davf+ahprL+iWYvPt+LrqLCh++r 
  Seita.7G222300.1.p 345 FDVDAVFAAHPRLAIWYVPTRLRQLCHQARG 375
                         ****************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.9E-1871375IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDPNDAFSAA HPFRWDLGPP AHAAPAPPPP PPPSLPLAPP VGAPRELEDL VAGYGVRPST  60
VARISELGFT ASTLLGMTER ELDDMMAALA GLFRWDVLLG ERFGLRAALR AERGRVMSLG  120
GRFHAGSTLD AASQEVLSDE RDAAASGGVA DDEAGRRMVT GKKQAKKGGA ARKGKKARRK  180
RELRPLDVLE DEGDEDGGCA SESTESSAGG GGGGGGGERQ REHPFVVTEP GEVARAKKNG  240
LDYLFHLYEQ CRVFLLQVQS IAKLGGHKAP TKVTNQVFRY AKKCGASYIN KPKMRHYVHC  300
YALHCLDEEA SNALRRAYKA RGENVGAWRQ ACYAPLVEIA ARHGFDVDAV FAAHPRLAIW  360
YVPTRLRQLC HQARGCGSHA AALPPPPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A3e-992163752161PROTEIN LEAFY
2vy2_A3e-992163752161PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G222300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1798820.0AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976675.10.0probable transcription factor FL
SwissprotQ0JAI10.0FL_ORYSJ; Probable transcription factor FL
TrEMBLK3YC120.0K3YC12_SETIT; Uncharacterized protein
STRINGSi011756m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.16e-98floral meristem identity control protein LEAFY (LFY)