PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1553s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 268aa    MW: 29960.2 Da    PI: 8.4931
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1553s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.52e-241055247
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            +ienk+ r+vtf+kR+ g+ KKA+ELS+LCd+e+aviifs+ gkl 
  SapurV1A.1553s0010.1.p 10 KIENKTSRHVTFAKRKGGLVKKAYELSTLCDVEIAVIIFSPAGKLI 55
                            69******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.913161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-27284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-22323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRVKLQLRK IENKTSRHVT FAKRKGGLVK KAYELSTLCD VEIAVIIFSP AGKLILFEGK  60
KRLEEILESY LNLTRKQRGR LHDEELVQRI SAQMSLEARI HNHLGGFGKI SNKSDLEDIE  120
NEILLCSFES ENIERQLRCF VGSPNFFKSI SEVEFHEKIM EKALKCVQNR KRAFHQEIAN  180
DTVGTMGSSS HSLNGHQQID PTNLVMDIAG SCNGFETFNQ PRAVAGITQS PGMLQGYAFP  240
SINIQNNRDI IEQGSASTTA AQQVIQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-15170169Myocyte-specific enhancer factor 2B
1tqe_Q6e-15170169Myocyte-specific enhancer factor 2B
1tqe_R6e-15170169Myocyte-specific enhancer factor 2B
1tqe_S6e-15170169Myocyte-specific enhancer factor 2B
5f28_A7e-15170169MEF2C
5f28_B7e-15170169MEF2C
5f28_C7e-15170169MEF2C
5f28_D7e-15170169MEF2C
6byy_A7e-15170169MEF2 CHIMERA
6byy_B7e-15170169MEF2 CHIMERA
6byy_C7e-15170169MEF2 CHIMERA
6byy_D7e-15170169MEF2 CHIMERA
6c9l_A6e-15170169Myocyte-specific enhancer factor 2B
6c9l_B6e-15170169Myocyte-specific enhancer factor 2B
6c9l_C6e-15170169Myocyte-specific enhancer factor 2B
6c9l_D6e-15170169Myocyte-specific enhancer factor 2B
6c9l_E6e-15170169Myocyte-specific enhancer factor 2B
6c9l_F6e-15170169Myocyte-specific enhancer factor 2B
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1553s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380673.23e-84MADS-box transcription factor 18
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-35AGAMOUS-like 104