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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0896s0120.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22650.4 Da PI: 10.237 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r en ++rqvtfskRrng+lKKA+ELS+LCdaev+++ifs+tgk y ++s SapurV1A.0896s0120.2.p 10 RLENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLVIFSPTGKCYQFAS 59 789*********************************************86 PP | |||||||
2 | K-box | 75.4 | 1.5e-25 | 82 | 171 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++ e ++ e++ Lkk i++++ ++Rh +Ged+e L +keL+qLe+qL+++ ++iRskK +++ e+i+ l+ k++++qeen++L+k SapurV1A.0896s0120.2.p 82 QTRSLECWRCEIEELKKIINKMEAQLRHCIGEDIEMLGMKELKQLERQLKTGAERIRSKKIRIIAEHINWLKGKQRAIQEENTRLKK 168 5667899*******************************************************************************9 PP K-box 97 kle 99 +l SapurV1A.0896s0120.2.p 169 RLH 171 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-30 | 2 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-35 | 2 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-22 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.611 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGRGKVVLQR LENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLVIFSP TGKCYQFASH 60 EMERTVARYR SEVCLSGPSD PQTRSLECWR CEIEELKKII NKMEAQLRHC IGEDIEMLGM 120 KELKQLERQL KTGAERIRSK KIRIIAEHIN WLKGKQRAIQ EENTRLKKRL HELHDDNISS 180 GILEPNARKA IQLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 85 | 1 | 82 | MEF2C |
5f28_B | 3e-20 | 1 | 85 | 1 | 82 | MEF2C |
5f28_C | 3e-20 | 1 | 85 | 1 | 82 | MEF2C |
5f28_D | 3e-20 | 1 | 85 | 1 | 82 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0896s0120.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044117.1 | 1e-116 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
TrEMBL | B9I3T7 | 1e-110 | B9I3T7_POPTR; Uncharacterized protein | ||||
STRING | Gorai.007G043400.1 | 1e-84 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-45 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0896s0120.2.p |