PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0890s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 232aa    MW: 25198 Da    PI: 4.6716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0890s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-092262046
                            TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                            G++ W++Ia+ ++ gRt++++k++w++
  SapurV1A.0890s0050.2.p  2 GSR-WSLIAAQLP-GRTDNDVKNYWNT 26
                            788.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.496132IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13238IPR009057Homeodomain-like
SuperFamilySSF466892.03E-8237IPR009057Homeodomain-like
PfamPF002492.1E-7226IPR001005SANT/Myb domain
CDDcd001671.15E-6428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGSRWSLIAA QLPGRTDNDV KNYWNTKLKK KILVGKISLS IKNSSTTAPP ASVTNIPTIP  60
CSTSPILYIP KAETESTVTF SDHYSLTQSS GAFPTLSDAG YEPVISSSTQ NWSQNHFQYS  120
SFPGIVDMSE FRASSMNSHI VSPSQEGSTM SDSSSLAMDY KGLSLPSTHG GPEEVGILMD  180
SELGFPSDFV NDLLFQDRES EVAANCFQYF ADYGYVDMKP QGLNQGVTNH Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0890s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015974.11e-127PREDICTED: transcription factor RAX2-like
RefseqXP_011019548.11e-127PREDICTED: transcription factor RAX2-like
TrEMBLB9HE031e-111B9HE03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25060.11e-112(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-15myb domain protein 36