PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0589s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 326aa    MW: 35903.3 Da    PI: 7.8724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0589s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd +l ++ +++G+g +W + +++ g++R++k+c++rw++yl
  SapurV1A.0589s0050.1.p 14 KGPWSPEEDAKLREYLEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding34.74e-1169111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g ++  Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0589s0050.1.p  69 GEFSDNEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             78999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.699966IPR017930Myb domain
SuperFamilySSF466894.3E-2711109IPR009057Homeodomain-like
SMARTSM007178.1E-131364IPR001005SANT/Myb domain
PfamPF002495.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-241569IPR009057Homeodomain-like
CDDcd001677.95E-101662No hitNo description
SMARTSM007171.1E-967115IPR001005SANT/Myb domain
PROSITE profilePS5129415.88467117IPR017930Myb domain
PfamPF002496.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKA NMKKGPWSPE EDAKLREYLE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDNEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGV  120
INPISQRKPQ QAALFSSLLQ ATSLPSSPSS LLSSSFTCSN NSYYSTQTRS FTEPISFSSS  180
PLTTSSFATA SMLQPRETFL GPVQNDQVKD NLLVFGGDAS CSSSDGSCSN QISHVKEEYD  240
QYGGCTNNNN EQMGLQNYLY NVVGDDQKLM ISSGAAAHGG VLNGLWPGDN LPDYGLEEIK  300
QLISTSSCNS FLFDENKTGE KVMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25111174108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0589s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381399.20.0transcription factor RAX2
TrEMBLA0A2K2A1180.0A0A2K2A118_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-76myb domain protein 36