PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0584s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 362aa    MW: 40113 Da    PI: 7.0888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0584s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-164997148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEd +l++ ++ +G+g +W + +++ g++R++k+c++rw++yl
  SapurV1A.0584s0070.1.p 49 RGPWSPEEDAKLKEFIEIHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 97
                            89*********************************************97 PP
2Myb_DNA-binding36.51.2e-11104146246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g ++ +Ed  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0584s0070.1.p 104 GEFSDDEDRMICSLYASIGSR-WSVIAAQLP-GRTDNDIKNYWNT 146
                             789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.044497IPR017930Myb domain
SuperFamilySSF466892.0E-2647144IPR009057Homeodomain-like
SMARTSM007171.7E-124899IPR001005SANT/Myb domain
PfamPF002494.1E-154997IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2350104IPR009057Homeodomain-like
CDDcd001675.54E-95197No hitNo description
PROSITE profilePS5129420.85598152IPR017930Myb domain
SMARTSM007171.5E-11102150IPR001005SANT/Myb domain
PfamPF002491.3E-10104146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-23105152IPR009057Homeodomain-like
CDDcd001679.40E-8105148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MHPIFSLTWC SENQVPGLSV LIRLVGFSGE KEERKMGRAP CCDKATVKRG PWSPEEDAKL  60
KEFIEIHGTG GNWIALPQKA GLKRCGKSCR LRWLNYLRPN IKHGEFSDDE DRMICSLYAS  120
IGSRWSVIAA QLPGRTDNDI KNYWNTKLKK KLMGLINHIA QRKPQQAAHF SSLLHTTPLP  180
SSPSTPLSSS PSFTCSNTSY NYTLAGSFTE PISFSSCPLS NNSFSTASIQ ETFVGSMRNY  240
HVKDSLMRFE GEASCSSSDG SCSNQMSHVK EEYEHGGGAN NNTEQVGLQN YLHNGAEDDQ  300
KLMVSSGGAG HGVLDVWKQI GLCEENPLDY GLEEIKQHIS TSNCNNFLFD ENKTADKVMY  360
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24491527108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0584s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443225.10.0transcription factor RAX2
TrEMBLA0A2K1XDI20.0A0A2K1XDI2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-75myb domain protein 36