PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0400s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27651.1 Da PI: 5.4394 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.3e-17 | 85 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+Wv+e+r+p +k+ r++lg+f ae+Aa+a++ a+++l+g SapurV1A.0400s0160.1.p 85 PVFRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPIAEMAARAHDVAALALRG 135 579****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-13 | 85 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 86 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 86 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 86 | 145 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-31 | 86 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.69E-30 | 87 | 145 | No hit | No description |
PRINTS | PR00367 | 1.2E-7 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDCFSHYSDP SPLGARIFWS VLNENNGIGQ EQCSYSPVLS DSSTASTVTT GVQPAPSLSD 60 EEVMLASRNP KKRAGRKKFR ETRHPVFRGV RRRNSGKWVC EVREPNKKSR IWLGTFPIAE 120 MAARAHDVAA LALRGRSACL NFADSAWRLP VPASSEAKDI QKAAAEAAEA FRPEGCVGGE 180 LMRRGDEGKK VAETAAEAEE GVFYMDDEAV FGMPGLLANM AEGMLLPPPH CGGGGDGWGN 240 TEDIDPDMSL WSFSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 84 | 142 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0400s0160.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ130068 | 0.0 | KJ130068.1 Populus simonii genotype 05 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds. | |||
GenBank | KJ130072 | 0.0 | KJ130072.1 Populus simonii genotype 09 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318846.1 | 1e-168 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 3e-79 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | B9I4F3 | 1e-166 | B9I4F3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s13870.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-63 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0400s0160.1.p |
Publications ? help Back to Top | |||
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