![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0378s0120.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 505aa MW: 55518.5 Da PI: 6.6048 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 359 | 405 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq SapurV1A.0378s0120.2.p 359 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 405 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.2E-45 | 48 | 232 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.259 | 355 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.71E-14 | 358 | 409 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-17 | 358 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 359 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 359 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-14 | 361 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 505 aa Download sequence Send to blast |
MGEKFWVNGE RGMVESVLGV EACEFLITSA YKNISNDLVS PPVNLGVQQG LVQLVEGFNW 60 NYAIFWCASG LKTGGSILVW GDGICRDPKG QGIGDGSSSG DGKSEGAEKR KEVKKRVLQR 120 LHMCFNGSDD DNFAASLVEV SDVEMFYLTS MYFTFRCDST CSPGEAYQSG RPIWASGMPS 180 CLGHYQSRSV LARSAGFQTV VFLPVKSGVL ELGSVKSIPE QHDFVEKARS IFGASNTAQA 240 KAAPKIFGRE LSLGGSKSRS ISINFSPKVE DELVFTSEPY PMQPMSTNQN YGSTYNGHPS 300 DNNEAKLFPH LNQTNAGFTA ETLVGGLEQP KDDLSPQGDE RKPRKRGRKP ANGREEPLNH 360 VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITF ITDLQKKIRV LETEGGRVNN 420 NQKQLPVPEI DFQPRQDDTA VRASCPMESH PVSTIIETFR EHQITTEDCN VSMEGDKIVH 480 TFSIRTQSGA ADQLKEKLEA ALSK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_B | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_E | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_F | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_G | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_I | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_M | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
5gnj_N | 6e-27 | 353 | 425 | 2 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 340 | 348 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0378s0120.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457616.1 | 0.0 | transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A2K2AKL7 | 0.0 | A0A2K2AKL7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s24240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-177 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0378s0120.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|