PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0255s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 538aa    MW: 60399.7 Da    PI: 6.0991
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0255s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.37.1e-941685362374
                    GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             ++ L+++A+++++++l+laq +L+rl+++ +sp+g+p+qR+a++f+eAL++ la    ++  + ++ + s++n +++++a+k+f+ +
  SapurV1A.0255s0090.1.p 168 IQDLIKAADCFDTNELQLAQVILERLNHRlQSPTGKPLQRAAFFFKEALQSLLAT--GSTRPQTNTVTPSWSNIIQTIKAYKAFFSI 252
                             689*************************99************************9..4444445666666677************** PP

                    GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakf 168
                             sPi+ f+ +t+NqaIl++++g+   +H+iDfdi+ G ++++L+++L +R+++      p lRiT+v  +  +   e++ ++erL++f
  SapurV1A.0255s0090.1.p 253 SPIPMFTDFTTNQAILDSLSGNsVFLHVIDFDIGFGCHYASLMKELVDRADScnnltYPLLRITAVITE--DTLIETKLIKERLSQF 337
                             **********************5667************************554556699********94..4999999********* PP

                    GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nses 252
                             A+el+++f++++++ ++ e+ +++++++  gE ++V l+l ++r l   +s+++  +++++ ++++sP vv+vv+ e  ++  +++s
  SapurV1A.0255s0090.1.p 338 AHELKIRFHIEFVLFRTSEMPSFKAIKFVDGEETVVILSLTIFRRL---GSTNN-VTTFVNDFRRVSPSVVIVVDGEgwTESgTGSS 420
                             ************999999999************************9...55555.667*******************554445677* PP

                    GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                             F + f+++le+ys++f+sl+a + +  ++++k+E +ll+++i  +v   g++       +++Wre +  aG++pv+ls++a  qa++
  SapurV1A.0255s0090.1.p 421 FRRNFANCLEFYSMMFESLDAAAITGGDWARKIEIFLLKPKILAAVEGCGRR------VASRWREVFLGAGMRPVQLSQFADFQAES 501
                             *******************99999999*******************999987......7899************************* PP

                    GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             ll +v+++ + v +++++lvl+W+drpL+++SaW+
  SapurV1A.0255s0090.1.p 502 LLGMVQVRDFYVAKRQAELVLCWQDRPLIATSAWK 536
                             ******999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.742141516IPR005202Transcription factor GRAS
PfamPF035142.5E-91168536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MKVPVPSPQN PKPASCNNTI NNSRNISFNP TNQNLCYEPT SVLDLRRSPS PARAGIAASA  60
SNPIEWDDHA LQNLDWDSIM RELDFHDDSA PALIKNFPLF GPCSESQIQN HNLPELTASQ  120
QIDPTQFLHS DFSDMYINSI PTHNLTSLDL SHSFHNNIGN WNAGFDFIQD LIKAADCFDT  180
NELQLAQVIL ERLNHRLQSP TGKPLQRAAF FFKEALQSLL ATGSTRPQTN TVTPSWSNII  240
QTIKAYKAFF SISPIPMFTD FTTNQAILDS LSGNSVFLHV IDFDIGFGCH YASLMKELVD  300
RADSCNNLTY PLLRITAVIT EDTLIETKLI KERLSQFAHE LKIRFHIEFV LFRTSEMPSF  360
KAIKFVDGEE TVVILSLTIF RRLGSTNNVT TFVNDFRRVS PSVVIVVDGE GWTESGTGSS  420
FRRNFANCLE FYSMMFESLD AAAITGGDWA RKIEIFLLKP KILAAVEGCG RRVASRWREV  480
FLGAGMRPVQ LSQFADFQAE SLLGMVQVRD FYVAKRQAEL VLCWQDRPLI ATSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2520153636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0255s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025728.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-158SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A385JI670.0A0A385JI67_POPTO; GRAS family transcription factor
STRINGPOPTR_0007s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-154GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]