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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0215s0310.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 35802.9 Da PI: 5.2851 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 127 | 175 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+W+AeIrdp++ rkr++lg+f taeeAa +++a+ +l+g SapurV1A.0215s0310.1.p 127 FRGVRQRP-WGKWAAEIRDPTQ---RKRVWLGTFNTAEEAATVYDRAAVELKG 175 8*******.**********965...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.56E-33 | 125 | 183 | No hit | No description |
PROSITE profile | PS51032 | 23.828 | 126 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-38 | 126 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 126 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 127 | 184 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-10 | 127 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-12 | 127 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MLTHNPNTMS VQTKVNSTEH VFATKKLIQN QQHHPSSRIR GQRIVRIIHT DPDATDSSSD 60 EEEEEDQERK FVKRAKTRVS EIRLLEQETA APAAPSPRTS NDHHRHSTRK RPSSRLPVSD 120 VTRRKNFRGV RQRPWGKWAA EIRDPTQRKR VWLGTFNTAE EAATVYDRAA VELKGPDAVT 180 NFPTKSVVTV KANDDGPDVQ CGSCDSPSSS GVNVMPSLAS VLRYEELAPF DPVLTEMSKV 240 IDDHGESCES PFSANVMTSP TSVLRYEEST LFDSLAYGDV DAFGFKIDVP SGLPDLMLPV 300 NFVNDEEFVD FDDFLVEAIC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 125 | 185 | 4 | 65 | ATERF1 |
3gcc_A | 2e-21 | 125 | 185 | 4 | 65 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0215s0310.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325634.2 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | B9INK5 | 0.0 | B9INK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s15190.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-35 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0215s0310.1.p |