PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0176s0500.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27837.3 Da    PI: 9.822
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0176s0500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-3161111151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                             krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  SapurV1A.0176s0500.5.p  61 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 111
                             79***********************************************96 PP
2K-box90.62.9e-30129211385
                   K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                             +++++s +   + +++ e++ Lk+++e Lqr++Rh+lGedL+s slkeLq+Leqq++++lk+iR++Kn+l++++i+elq k +
  SapurV1A.0176s0500.5.p 129 ERQSVSPDLDSQGNWTLEYNMLKAKVELLQRNHRHYLGEDLDSVSLKELQNLEQQIDTALKHIRARKNHLMYQSISELQIKAR 211
                             56666656666799*****************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.14253113IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-4053112IPR002100Transcription factor, MADS-box
CDDcd002652.92E-4154131No hitNo description
SuperFamilySSF554552.22E-3354143IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-315575IPR002100Transcription factor, MADS-box
PROSITE patternPS00350055109IPR002100Transcription factor, MADS-box
PfamPF003197.2E-2662109IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-317590IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-3190111IPR002100Transcription factor, MADS-box
PfamPF014864.8E-25139211IPR002487Transcription factor, K-box
PROSITE profilePS5129713.397140236IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MISKRNFTFI ILFLFLSISH FLGVQDCCFL RFFFGSGSWV ILREKRRGQE REMGRGRVQL  60
KRIENKINRQ VTFSKRRAGL LKKAHEISVL CDAEVALIVF SHKGKLFEYS TNACMEKILE  120
RYERCSYAER QSVSPDLDSQ GNWTLEYNML KAKVELLQRN HRHYLGEDLD SVSLKELQNL  180
EQQIDTALKH IRARKNHLMY QSISELQIKA RPYICTNLCF EFPLSLCNLG SYKHRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-2053137184MEF2 CHIMERA
6byy_B3e-2053137184MEF2 CHIMERA
6byy_C3e-2053137184MEF2 CHIMERA
6byy_D3e-2053137184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0176s0500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6159640.0AY615964.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311353.21e-100truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_024462610.11e-100truncated transcription factor CAULIFLOWER A isoform X3
SwissprotQ6E6S76e-91AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ6IWY31e-100Q6IWY3_POPTR; APETALA1-like MADS-box PTAP1-1a
TrEMBLS5PTH23e-99S5PTH2_9ROSI; APETALA1-like MADS-box AP1-1
STRINGevm.model.supercontig_1.1624e-94(Carica papaya)
STRINGcassava4.1_031659m4e-94(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]