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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0500.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 261aa MW: 30614.5 Da PI: 10.0043 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.2 | 3.3e-31 | 61 | 111 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ SapurV1A.0176s0500.4.p 61 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 111 79***********************************************96 PP | |||||||
2 | K-box | 101.4 | 1.2e-33 | 129 | 225 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++++s + + +++ e++ Lk+++e Lqr++Rh+lGedL+s slkeLq+Leqq++++lk+iR++Kn+l++++i+elq ke++l+e SapurV1A.0176s0500.4.p 129 ERQSVSPDLDSQGNWTLEYNMLKAKVELLQRNHRHYLGEDLDSVSLKELQNLEQQIDTALKHIRARKNHLMYQSISELQIKERALRE 215 56666656666799************************************************************************* PP K-box 90 enkaLrkkle 99 +n++L k+++ SapurV1A.0176s0500.4.p 216 QNNMLVKQVA 225 ******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.142 | 53 | 113 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-40 | 53 | 112 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.19E-41 | 54 | 131 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-33 | 54 | 143 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 55 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 55 | 109 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-26 | 62 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 75 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-31 | 90 | 111 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-28 | 139 | 224 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.998 | 140 | 230 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MISKRNFTFI ILFLFLSISH FLGVQDCCFL RFFFGSGSWV ILREKRRGQE REMGRGRVQL 60 KRIENKINRQ VTFSKRRAGL LKKAHEISVL CDAEVALIVF SHKGKLFEYS TNACMEKILE 120 RYERCSYAER QSVSPDLDSQ GNWTLEYNML KAKVELLQRN HRHYLGEDLD SVSLKELQNL 180 EQQIDTALKH IRARKNHLMY QSISELQIKE RALREQNNML VKQVAILYHP KTCKLHFNSF 240 QHALYMRGPF TCSHLAQEVA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 3e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 3e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 3e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0500.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY615964 | 0.0 | AY615964.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311353.2 | 1e-109 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Swissprot | Q6E6S7 | 2e-99 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | S5PTH2 | 1e-108 | S5PTH2_9ROSI; APETALA1-like MADS-box AP1-1 | ||||
STRING | cassava4.1_029935m | 1e-102 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-95 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0500.4.p |
Publications ? help Back to Top | |||
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