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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0146s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 188aa MW: 20444.9 Da PI: 9.0567 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.1 | 2.5e-21 | 4 | 65 | 67 | 128 |
NAM 67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++a+g r+nr+t+sgyWkatg+ + v+s++++++gl kt+vfy g+ap+g+kt+W m+eyr+ SapurV1A.0146s0200.1.p 4 REARGGRPNRSTASGYWKATGSPRYVYSSDNQVIGLMKTMVFYMGKAPSGRKTKWKMNEYRA 65 567899******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.798 | 1 | 91 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.94E-24 | 4 | 90 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-9 | 9 | 64 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MQAREARGGR PNRSTASGYW KATGSPRYVY SSDNQVIGLM KTMVFYMGKA PSGRKTKWKM 60 NEYRAIGAHG LSRNATPKLR HEFSLCRVYV VSGSFRAFDR RPLGAVAGET QHPLGVPHAG 120 DAATTSAQNL MIVEMTSSPE TSYSGEDHVD NPGTAAGASW GLLDGLEPPE WEWPEQLHCP 180 GTDRFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-18 | 8 | 89 | 86 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-18 | 8 | 89 | 86 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-18 | 8 | 89 | 86 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-18 | 8 | 89 | 86 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-18 | 8 | 89 | 89 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-18 | 8 | 89 | 86 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-18 | 8 | 89 | 86 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0146s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298277.2 | 6e-90 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-51 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2K2C1M7 | 1e-88 | A0A2K2C1M7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22630.1 | 2e-89 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-53 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0146s0200.1.p |
Publications ? help Back to Top | |||
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