PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0108s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 384aa    MW: 42805.3 Da    PI: 9.3099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0108s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12209253554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             h + Er+RR++iN++f  Lr++lP        K +Ka+iL+++ eY+ sL
  SapurV1A.0108s0270.1.p 209 HMISERKRREKINESFKALRSILPLE-----SKKDKASILTRTREYLTSL 253
                             8899*********************8.....699*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17201271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.758204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-13204258No hitNo description
Gene3DG3DSA:4.10.280.103.5E-16208273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10209253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MESPEISSLI FTIPSSSHVH EPHREAPSVL LPPIFPSTSS PLPTPTGNIL QQVLQSFQQK  60
PSPASPNQQA IQSSQPLPSS LFQEAVQPLQ AIQSSTSPHQ QAMQAFALER NIHLPTPESE  120
DDVMKRAILA VLSFPSSSSS HSSPHLYPVS QGASAFKNYG SAPAPTSQTR SSLHRQSIPH  180
RVITFYKHLN TERRDQMLGG RPTSTQLHHM ISERKRREKI NESFKALRSI LPLESKKDKA  240
SILTRTREYL TSLKAQVEEL SRKNQNLEAQ LSKAAGAQVR DSPYEKLDVR VTHISESTSE  300
QRIADLEVNV RGESPILDMV IIRILEFLRQ VTDVRLMSIQ ATTHTAESNS FNRVVLRLSI  360
EGNEWDEAAF QEAVKRVVED LAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217ERKRRE
2213218RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0108s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004714.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A3N7FZ360.0A0A3N7FZ36_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-56bHLH family protein