PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0022s0600.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 856aa    MW: 96265.9 Da    PI: 9.569
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0022s0600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-094681340
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                             W +eE e++++a +++G++ W+++a+ +  +R+l+++
  SapurV1A.0022s0600.4.p 46 QWGKEELERFYKAYRKHGKD-WEKVAAVVR-NRSLEML 81
                            6*****************99.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6774293IPR017884SANT domain
SuperFamilySSF466898.58E-94391IPR009057Homeodomain-like
SMARTSM007177.9E-54391IPR001005SANT/Myb domain
PfamPF002492.6E-74679IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-44677IPR009057Homeodomain-like
CDDcd001671.61E-54789No hitNo description
PfamPF065841.4E-31620720IPR033471DIRP domain
SMARTSM011358.5E-54620721IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAPSRKRSVN KRYSNVNEVT STKNVPVTAN KSKPRKRKLS EMLGPQWGKE ELERFYKAYR  60
KHGKDWEKVA AVVRNRSLEM LEALYTMNKA YLSLPKGFAS AAGLIAMMTD HYSNLGESDS  120
EIESNGGTGT SQKSQKRARV TKGSDAPPVP DLLQSQPAAS SYGCLSLLKK RRSGSKPWAV  180
GKRTPRVPVT YSYDKYSEEK YVSPIRQGFK VKADAVDDDV AHEIALALTE ASQRGGSPQV  240
SQTPKRKTKM PSRAQHDEQM HAESEMMSAK LRGSEVEEVG CELSLGSTEA DVVDYVRDES  300
SWKGKRYHGR RPLAENLDDH LDDVREACSG TEEGQKLDAA EELFEMEVAD TKLLRPSKGP  360
RKRSKKVLFG EVEDADFDAL EALADLSLRL PETPVDTGSS VYVEEEKTRI VAKSKLKGNH  420
SSPGVKPISF KTTKQGKVFT HNASSIQEAK DAAHQFIPVM RKRRQKHLPS KISENDEHAD  480
SYLGESQKVE VKTDDNNLLS KGKRSQYAAC SKQGKLMKPA ERTSSSNNHG KELNNSAPTT  540
IQVLSASQFN LPTKVRSSRK LNTPKMLVER DSKSSENIIV NSQSNTLIPS SQDRVLDLKG  600
KLSNCLSRYL VRRWCVYEWF YSAIDYPWFS RREFVEYLEH VRLGHIPRLT RVEWGVIRSS  660
LGKPRRLSEQ FLKEEKEKLN HYRESVREHY AELRTGTREG LPTDLARPLS VGQRIIALHP  720
STSEIHDGSV LTVDHSRCRV QFDRPELGVE FVMDVDCMPL NPVDNMPASM IGHSIALNRY  780
IKNLNELKIS GQPAEKKTEG FKFSPCENLE DNSALPHSSP STYHCSVLLQ QPMVRSPWNI  840
SSTMCLSHFV NYEVF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
2459464MRKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0022s0600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463377.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_024463379.10.0protein ALWAYS EARLY 3 isoform X3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A2K1ZL810.0A0A2K1ZL81_POPTR; Uncharacterized protein
STRINGPOPTR_0008s22660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]