PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0017s0450.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 266aa MW: 27607 Da PI: 5.9253

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0017s0450.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.1e-37	27	86	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+st tkfCy+nny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn ++s SapurV1A.0017s0450.1.p 27 TEPLPCPRCNSTTTKFCYFNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGSRKNSRRS 86 67899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	28	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.05	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPSEISQTHP KEAQNTMGTA PPPSKTTEPL PCPRCNSTTT KFCYFNNYNL SQPRHFCKSC 60 RRYWTQGGTL RDVPVGGGSR KNSRRSRSSS NNSSPSTSSS NSTTSNSATL TALTSIHEPE 120 SIPVSFSSTT DSGVAAVKTD EMPAGINLNE GLAENGNFIS LTGSNDQHGF NGLVGYGYES 180 GFGLGSCEAG LGFGARGFWS FPGMENVADN GGTIGGCTSG CNTWQLQGDH VEGGGGHGGF 240 ATDGENYFGS WPGLAISAPA EKGSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0017s0450.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146942	0.0	EF146942.1 Populus trichocarpa clone WS01225_E04 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017255.1	1e-137	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A9PF29	1e-139	A9PF29_POPTR; Uncharacterized protein
STRING	POPTR_0002s13100.1	1e-135	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	5e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0017s0450.1.p