PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s1070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 504aa    MW: 55051 Da    PI: 6.4471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s1070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13358404455
                             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  SapurV1A.0006s1070.1.p 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 404
                             799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-4448231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18357427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-14357407No hitNo description
PfamPF000102.9E-10358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-15360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGEKFWVKEE KGMVESVLGV EACEFLITSA SKNLLNDLVS PPVNLGVQQG LGKIVEGSNW  60
NYVIFWHASG LKSGGFILVW GDGICQDPKG GGVVHGSSSA DGESEGVEKR KVKKCVLRKL  120
HACFNGSDDG SYAASLDEVS DVEMFYLSSM YFTFRCDSSY GPGEAFKSGR PTWASSMASC  180
LDHYHLRSVL ARSAGFQTVV FLPVKSGVLE LGSVKSIPEE HDSVEKLKGL FGASSNAQAK  240
AVPKIFGREL SLGGSQSRSI SINFSPKVED ELVFTSESYA MKTISTNQVY GSTSNGRPSD  300
KSEANLFPHL NQALVGFNTE TVVGGLEQPN DDLSPQGDER KPRKRGRKPA NGREEPLNHV  360
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQKKIGAL ETERGVVNNN  420
QKQLPMPEID FQPRQDDTVV RASCPLDSHP VSSIIETFRE HQITPQDCNV SMEGDKIVHT  480
FSFLTQSGAA EQLKEKLESG LSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29352426276Transcription factor MYC2
5gnj_B5e-29352426276Transcription factor MYC2
5gnj_E5e-29352426276Transcription factor MYC2
5gnj_F5e-29352426276Transcription factor MYC2
5gnj_G5e-29352426276Transcription factor MYC2
5gnj_I5e-29352426276Transcription factor MYC2
5gnj_M5e-29352426276Transcription factor MYC2
5gnj_N5e-29352426276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RKPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s1070.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451240.10.0transcription factor bHLH3
SwissprotO234871e-177BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A2K2BD820.0A0A2K2BD82_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-172bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]